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[192468_at]

Description T09A5.2 /REP_DB=WormBase Gene ID /WP=CE01083 /GEN=klp-3 /TR=SW:P45962 /GB=CAA85331.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=kinesin like protein
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 52      6grp_total > 50      4grp_total > 61      6grp_highest_sub > 04      6grp_cgc > 83      6grp_high1_sub > 03_04      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 586
1 2 3 4 range
A 624.4
(3)
P 		387.6
(-0.3)
P 		495.1
(1.2)
P 		198.8
(-3)
P 		426
B 649.2
(3)
P 		560.9
(1.9)
P 		626.4
(2.7)
P 		167.1
(-3)
P 		482
C 717
(3)
P 		462.2
(0.4)
P 		466.8
(0.4)
P 		130.9
(-3)
P 		586
avr 663.5
(3) 		470.2
(0.7) 		529.4
(1.4) 		165.6
(-3) 		498

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 859
1 2 3 4 5 6 range
A 341
(-3)
P 		784.2
(0.3)
P 		707.7
(-0.3)
P 		1159.1
(3)
P 		356.2
(-2.9)
P 		336
(-3)
P 		823
B 508.4
(-0.5)
P 		594.3
(0.5)
P 		789.3
(3)
P 		617.1
(0.8)
P 		506.2
(-0.6)
P 		312.1
(-3)
P 		477
C 782.6
(1.7)
P 		660.8
(0.5)
P 		922.4
(3)
P 		795.7
(1.8)
P 		576.2
(-0.3)
P 		300.1
(-3)
P 		622
avr 544
(-0.5) 		679.8
(1) 		806.5
(2.4) 		857.3
(3) 		479.5
(-1.2) 		316.1
(-3) 		541
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 227.3
(3)
P 		84.1
(-1.3)
P 		129.4
(0)
P 		29.1
(-3)
P 		198
B 207
(3)
P 		138.5
(0.6)
P 		145.1
(0.8)
P 		35.6
(-3)
P 		171
C 237.3
(3)
P 		132.9
(0.1)
P 		162.7
(0.9)
P 		22.1
(-3)
P 		215
avr 223.9
(3) 		118.5
(-0.2) 		145.7
(0.6) 		28.9
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 62.9
(-3)
P 		278.9
(2.6)
P 		154.1
(-0.6)
P 		294
(3)
P 		107.5
(-1.8)
P 		81.8
(-2.5)
P 		231
B 176.9
(1.1)
P 		197.8
(2.5)
P 		191.7
(2.1)
P 		163.4
(0.2)
P 		205.7
(3)
P 		116.4
(-3)
P 		89
C 290.1
(3)
P 		201.6
(0.2)
P 		234.8
(1.3)
P 		160
(-1.1)
P 		186.5
(-0.3)
P 		100.4
(-3)
P 		190
avr 176.6
(0.7) 		226.1
(3) 		193.5
(1.5) 		205.8
(2) 		166.6
(0.2) 		99.5
(-3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192468_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5550
Sequence Type Exemplar sequence
Representative Public ID T09A5.2 NCBI
Target Description T09A5.2 /REP_DB=WormBase Gene ID /WP=CE01083 /GEN=klp-3 /TR=SW:P45962 /GB=CAA85331.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=kinesin like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027161(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027161 NCBI Caenorhabditis elegans Kinesin-Like Protein family member (klp-3) (klp-3) mRNA, complete cds. 11/11 None
SNAP00000029432 ENSEMBL cdna:SNAP chromosome:CEL140:II:7842338:7845304:1 11/11 None
GENEFINDER00000029447 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7842338:7845304:1 11/11 None
T09A5.2a ENSEMBL cdna:known chromosome:CEL140:II:7842338:7845565:1 gene:T09A5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
191697 3 1 NM_001027161 192468_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7842334-7845301(+) 100.0 100.0
Public Domain and Genome References
Ensembl T09A5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85331 Hypothetical protein T09A5.2a [Caenorhabditis elegans] ref|NP_001022332.1| Kinesin-Like Protein family member (klp-3) [Caenorhabditis elegans] sp|P45962|KLP3_CAEEL Kinesin-like protein klp-3 0.0
blast CAE59840 Hypothetical protein CBG03312 [Caenorhabditis briggsae] 0.0
blast AAB39558 microtubule-based motor protein 5.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:192468_AT
gaggaagtttcagtgaactctgcagaagaagtcacggaaacgcttgctagaggaagaaag
aataaggctgtagctgctactgaagccaatattgaatccagtcgttctcatgttattgtt
agagttttagtatcggccacaaatcttataacaaaagcaactacagttggtcgtctgaat
ttggtagatcttgctggatcagagagagtttctcaaacgaatgcaaccggtcaactgcta
aaagaagctcaagctatcaataaatctctatctgaacttggaaatgttgtacttgctctt
cgccagaatcaaaaacatattccattcagaaattgtcaattgacaagaattcttgaagat
agcttgaatggagacagtaaaactctggtcattgtgcatttatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGAAGTTTCAGTGAACTCTGCAG 484 405 1237 Antisense
GAAGTCACGGAAACGCTTGCTAGAG 286 337 1264 Antisense
GTAGCTGCTACTGAAGCCAATATTG 454 457 1306 Antisense
GAATCCAGTCGTTCTCATGTTATTG 201 331 1330 Antisense
GAGTTTTAGTATCGGCCACAAATCT 191 399 1358 Antisense
GCAACTACAGTTGGTCGTCTGAATT 627 319 1393 Antisense
GAGTTTCTCAAACGAATGCAACCGG 510 397 1442 Antisense
ATGCAACCGGTCAACTGCTAAAAGA 565 43 1457 Antisense
GGAAATGTTGTACTTGCTCTTCGCC 122 525 1516 Antisense
ACTTGCTCTTCGCCAGAATCAAAAA 104 103 1527 Antisense
AACTCTGGTCATTGTGCATTTATCA 519 141 1617 Antisense
Sequence Source Affymetrix Proprietary Database