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[192466_at] Zinc finger, C4 type (two domains)

Description ZK455.6 /REP_DB=WormBase Gene ID /WP=CE03817 /TR=Q19217 /GB=CAA91494.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 90      6grp_total > 75      4grp_total > 01      6grp_cgc > 67      6grp_cgc_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 83.6
(-2.2)
P 		79.8
(-2.4)
P 		68.4
(-3)
P 		187.9
(3)
P 		120
B 72.1
(-3)
P 		92.1
(-1.9)
P 		129.2
(0.2)
P 		180.6
(3)
P 		109
C 116.8
(-1.3)
P 		77.6
(-3)
P 		84.9
(-2.7)
P 		217.4
(3)
P 		140
avr 90.8
(-2.6) 		83.2
(-3) 		94.2
(-2.4) 		195.3
(3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 136.3
(1.5)
P 		84.9
(-3)
P 		153.2
(3)
P 		132.9
(1.2)
P 		119.9
(0.1)
P 		144.3
(2.2)
P 		68
B 100.4
(-2.6)
P 		95.4
(-3)
P 		154.1
(1.8)
P 		116.1
(-1.3)
P 		168.9
(3)
P 		140.3
(0.7)
P 		74
C 41.6
(-3)
P 		135.9
(0.9)
P 		86.1
(-1.2)
P 		172.1
(2.3)
P 		100.6
(-0.6)
P 		188.2
(3)
P 		147
avr 92.8
(-3) 		105.4
(-1.8) 		131.1
(0.5) 		140.4
(1.4) 		129.8
(0.4) 		157.6
(3) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 30.4
(3)
P 		17.3
(-3)
P 		17.9
(-2.7)
P 		27.5
(1.7)
P 		13
B 23
(-2.9)
P 		22.8
(-3)
P 		29.9
(-0.3)
P 		38.5
(3)
P 		16
C 38.7
(3)
P 		22.3
(-3)
P 		29.6
(-0.3)
P 		36.7
(2.3)
P 		16
avr 30.7
(1.4) 		20.8
(-3) 		25.8
(-0.8) 		34.2
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 25.1
(-3)
P 		30.2
(-0.2)
P 		33.4
(1.5)
P 		33.7
(1.6)
P 		36.2
(3)
P 		35.1
(2.4)
P 		11
B 34.9
(-2.3)
P 		31.8
(-2.8)
P 		37.4
(-2)
P 		30.8
(-3)
P 		68.6
(3)
P 		52.3
(0.4)
P 		38
C 15.4
(-3)
P 		41.5
(0.3)
P 		21.9
(-2.2)
P 		34.6
(-0.6)
P 		32.5
(-0.8)
P 		63
(3)
P 		48
avr 25.1
(-3) 		34.5
(-0.7) 		30.9
(-1.6) 		33
(-1.1) 		45.8
(2) 		50.1
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192466_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16332
Sequence Type Exemplar sequence
Representative Public ID ZK455.6 NCBI
Target Description ZK455.6 /REP_DB=WormBase Gene ID /WP=CE03817 /TR=Q19217 /GB=CAA91494.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077492(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077492 NCBI Caenorhabditis elegans ZK455.6 (ZK455.6) mRNA, complete cds. 11/11 None
ZK455.6 ENSEMBL cdna:known chromosome:CEL140:X:11318291:11320545:1 gene:ZK455.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004972 8/11 Cross Hyb Matching Probes None
GENEFINDER00000004981 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11318290-11320545(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C4 type (two domains)
Gene Symbol nhr-33
Ensembl ZK455.6
Entrez Gene 191322 Entrez gene
SwissProt Q19217 EMBL-EBI
WormBase CE03817 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
4879 ligand-dependent nuclear receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91494 Hypothetical protein ZK455.6 [Caenorhabditis elegans] emb|CAA91462.1| Hypothetical protein ZK455.6 [Caenorhabditis elegans] ref|NP_509893.1| ZK455.6 [Caenorhabditis elegans] 0.0
blast CAE70659 Hypothetical protein CBG17366 [Caenorhabditis briggsae] 1.0E-146
blast CAE73281 Hypothetical protein CBG20699 [Caenorhabditis briggsae] 6.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 2.6E-13
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 6.0E-25
Sequence
Target Sequence 
>C. ELEGANS:192466_AT
ttttcacctttcaattctctcaaattcgaagataaggttgcactgttcaaaaactttttt
tgttacttctcgcataccgaccgagcatatcaatcttttaaacaatttgaaagcgataat
cgtgagtttatctttcacgtaatcagatacccatttgaacgatcaatcttaatcaatgat
aagatacttatgcctgatggtggatttatcaaacgaacggaacttggaagattctatgag
aatgcagagggtgtacatacttcagcagaagatgctgcaaaaatcttccagccagctctt
aattatattttggatgtcattgtcgactatatgcgacgtattcacattattgagacggaa
tatcttgctcttttgggtttttgtttatgggatgacgcagttcctggattatccaaagaa
gcaaaatccctggcagtgcaaacgcagtctaaattgcttgcagagttgcaaaatttctat
tcttcacaaaacaaagacgcggttgagatcacccaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCACCTTTCAATTCTCTCAAAT 201 677 601 Antisense
TTTTTTGTTACTTCTCGCATACCGA 370 675 656 Antisense
GCATACCGACCGAGCATATCAATCT 234 307 672 Antisense
GATACTTATGCCTGATGGTGGATTT 563 419 783 Antisense
GCAGAGGGTGTACATACTTCAGCAG 118 313 844 Antisense
AAAATCTTCCAGCCAGCTCTTAATT 311 133 880 Antisense
GGAATATCTTGCTCTTTTGGGTTTT 402 533 957 Antisense
GATGACGCAGTTCCTGGATTATCCA 585 411 991 Antisense
AATCCCTGGCAGTGCAAACGCAGTC 175 167 1025 Antisense
ACGCAGTCTAAATTGCTTGCAGAGT 686 91 1042 Antisense
AAGACGCGGTTGAGATCACCCAACG 475 151 1094 Antisense
Sequence Source Affymetrix Proprietary Database