[Home] | [Total List]

[192465_at] testis-specific protein TPX-1 like

Description F09E8.5 /REP_DB=WormBase Gene ID /WP=CE09282 /TR=Q93444 /GB=CAA98060.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster 6grp_total > 18      4grp_total > 46      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1492
1 2 3 4 range
A 1435.2
(3)
P 		385.7
(-1.7)
P 		166.5
(-2.6)
P 		82.3
(-3)
A 		1353
B 1304.9
(3)
P 		345.6
(-1.6)
P 		185
(-2.4)
P 		52
(-3)
A 		1253
C 1544.1
(3)
P 		332.2
(-1.9)
P 		147.4
(-2.6)
P 		57.1
(-3)
A 		1487
avr 1428.1
(3) 		354.5
(-1.7) 		166.3
(-2.5) 		63.8
(-3) 		1364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 185.1
(3)
P 		91.3
(-0.6)
P 		108.2
(0.1)
P 		50.8
(-2.1)
A 		85.8
(-0.8)
P 		27.6
(-3)
A 		158
B 254.1
(3)
P 		100.5
(-0.7)
P 		4
(-3)
A 		64.3
(-1.6)
A 		74.7
(-1.3)
M 		9.8
(-2.9)
A 		250
C 251.5
(3)
P 		127.4
(-0.3)
P 		28.7
(-3)
A 		56.7
(-2.2)
A 		83.1
(-1.5)
A 		56.6
(-2.2)
A 		223
avr 230.2
(3) 		106.4
(-0.7) 		47
(-2.5) 		57.3
(-2.2) 		81.2
(-1.5) 		31.3
(-3) 		199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 513
1 2 3 4 range
A 522.5
(3)
P 		83.7
(-2.2)
P 		43.5
(-2.6)
P 		12
(-3)
A 		511
B 416.1
(3)
P 		85.4
(-1.9)
P 		42.9
(-2.5)
P 		11.1
(-3)
A 		405
C 511.2
(3)
P 		95.5
(-2)
P 		51.4
(-2.5)
P 		9.6
(-3)
A 		502
avr 483.3
(3) 		88.2
(-2) 		45.9
(-2.6) 		10.9
(-3) 		472

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 34.1
(3)
P 		32.5
(2.6)
P 		23.6
(0.7)
P 		12.9
(-1.6)
A 		25.9
(1.2)
P 		6.7
(-3)
A 		27
B 88.4
(3)
P 		33.4
(-0.8)
P 		1
(-3)
A 		17
(-1.9)
A 		30.3
(-1)
M 		3.7
(-2.8)
A 		87
C 93.2
(3)
P 		38.9
(-0.8)
P 		7.3
(-3)
A 		11.4
(-2.7)
A 		26.9
(-1.6)
A 		18.9
(-2.2)
A 		86
avr 71.9
(3) 		34.9
(-0.6) 		10.6
(-2.9) 		13.8
(-2.6) 		27.7
(-1.3) 		9.8
(-3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192465_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9407
Sequence Type Exemplar sequence
Representative Public ID F09E8.5 NCBI
Target Description F09E8.5 /REP_DB=WormBase Gene ID /WP=CE09282 /TR=Q93444 /GB=CAA98060.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070131(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070131 NCBI Caenorhabditis elegans F09E8.5 (F09E8.5) mRNA, complete cds. 11/11 None
SNAP00000017201 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13165503:13166725:1 11/11 None
GENEFINDER00000017204 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13155203:13166725:1 11/11 None
F09E8.5 ENSEMBL cdna:known chromosome:CEL140:IV:13165503:13166725:1 gene:F09E8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13165508-13166731(+) 100.0 100.0
Public Domain and Genome References
Gene Title testis-specific protein TPX-1 like
Ensembl F09E8.5
Entrez Gene 184246 Entrez gene
SwissProt Q93444 EMBL-EBI
WormBase CE09282 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98059 Hypothetical protein F09E8.3 [Caenorhabditis elegans] ref|NP_502531.1| MSH (MutS Homolog) family member (msh-5) [Caenorhabditis elegans] gb|AAF76200.1| MSH-5 [Caenorhabditis elegans] sp|Q19272|MSH5_CAEEL MutS protein homolog 0.0
blast T20660 hypothetical protein F09E8.3 - Caenorhabditis elegans 0.0
blast AAC70065 MutS homolog [Caenorhabditis elegans] 0.0
blast CAA98060 Hypothetical protein F09E8.5 [Caenorhabditis elegans] ref|NP_502532.1| F09E8.5 [Caenorhabditis elegans] 1.0E-122
blast CAA94335 Hypothetical protein C39E9.2 [Caenorhabditis elegans] ref|NP_502506.1| C39E9.2 [Caenorhabditis elegans] 1.0E-104
blast CAE58674 Hypothetical protein CBG01847 [Caenorhabditis briggsae] 3.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 9.0E-59
Pfam IPR007696 EMBL-EBI MutS III 1.1E-7
Pfam IPR007861 EMBL-EBI MutS IV 3.2E-22
Pfam IPR000432 EMBL-EBI DNA mismatch repair protein MutS, C-terminal 3.9E-41
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 9.0E-59
Sequence
Target Sequence 
>C. ELEGANS:192465_AT
tatactcaattcacagccaacggacaagcagctatccttaatgtccataatactcttcga
tcaagaattgctaagggaacatacgtagcaaggggtaccgtaaagcatgcggcaagtgac
atgcttaagatgaaatggctcagatcactcgctacatcttctcaaatctacgctaaccgg
tgcccaacgggtcattcgaatatgattggagttggagaaaacctctactggtactggact
tctggaaccatcaccaacattgatcagtttggagcaatggcttctgctgcctgggagaag
gagttccaggactatggatggagctcaaacacccttaccatgtcgttgttcaactcagga
gtcggacatgctacccaaatggcttgggcaaagacgaatttgattggatgtggagtgaag
aattgtggaatggataccaatgggatgaataaagtcgctgttgtctgtcactaccagcca
caaggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATACTCAATTCACAGCCAACGGAC 431 657 58 Antisense
AGCAGCTATCCTTAATGTCCATAAT 470 77 84 Antisense
TGAAATGGCTCAGATCACTCGCTAC 218 573 188 Antisense
TCGCTACATCTTCTCAAATCTACGC 49 601 206 Antisense
TCTCAAATCTACGCTAACCGGTGCC 294 611 217 Antisense
GTGCCCAACGGGTCATTCGAATATG 690 477 237 Antisense
TTTGGAGCAATGGCTTCTGCTGCCT 218 667 325 Antisense
CCTTACCATGTCGTTGTTCAACTCA 479 269 390 Antisense
CTCAGGAGTCGGACATGCTACCCAA 477 227 411 Antisense
TAAAGTCGCTGTTGTCTGTCACTAC 312 641 507 Antisense
TCTGTCACTACCAGCCACAAGGAAA 339 607 521 Antisense
Sequence Source Affymetrix Proprietary Database