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[192464_at] Zinc finger, C2H2 type (3 domains)

Description ZK287.6 /REP_DB=WormBase Gene ID /WP=CE06615 /TR=Q23458 /GB=CAA94802.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (3 domains)
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 82      6grp_total > 77      4grp_total > 63      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 356.5
(-0.7)
P 		340.5
(-3)
P 		374.2
(1.8)
P 		382.7
(3)
P 		42
B 375.2
(3)
P 		336.6
(-3)
P 		373.5
(2.7)
P 		342
(-2.2)
P 		39
C 413.7
(3)
P 		339.9
(-2.1)
P 		385.6
(1.1)
P 		326.9
(-3)
P 		87
avr 381.8
(3) 		339
(-3) 		377.8
(2.4) 		350.5
(-1.4) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 368.7
(1.4)
P 		214.5
(-3)
P 		309.8
(-0.3)
P 		290.6
(-0.8)
P 		340
(0.6)
P 		426.6
(3)
P 		212
B 288.5
(-2.5)
P 		271.7
(-3)
P 		373.1
(0.1)
P 		273.9
(-2.9)
P 		386
(0.5)
P 		469.1
(3)
P 		197
C 259.6
(-2.6)
P 		274.7
(-2.2)
P 		246.4
(-3)
P 		294.7
(-1.6)
P 		266.2
(-2.4)
P 		448.1
(3)
P 		202
avr 305.6
(-1.4) 		253.6
(-3) 		309.8
(-1.3) 		286.4
(-2) 		330.7
(-0.6) 		447.9
(3) 		194
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 129.8
(3)
P 		73.9
(-1.5)
P 		97.8
(0.4)
P 		56
(-3)
P 		74
B 119.6
(3)
P 		83.1
(-1.7)
P 		86.5
(-1.3)
P 		72.9
(-3)
P 		47
C 136.9
(3)
P 		97.7
(0.1)
P 		134.4
(2.8)
P 		55.1
(-3)
P 		82
avr 128.8
(3) 		84.9
(-0.9) 		106.2
(1) 		61.3
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 68
(-2.9)
P 		76.3
(-1.5)
P 		67.5
(-3)
P 		73.7
(-2)
P 		102.6
(2.8)
P 		103.9
(3)
P 		36
B 100.4
(-1.4)
P 		90.5
(-1.9)
P 		90.6
(-1.9)
P 		72.5
(-3)
P 		156.8
(1.9)
P 		174.9
(3)
P 		102
C 96.2
(-0.6)
P 		83.8
(-1.4)
P 		62.7
(-2.8)
P 		59.3
(-3)
P 		86.1
(-1.2)
P 		150
(3)
P 		91
avr 88.2
(-1.4) 		83.5
(-1.8) 		73.6
(-2.6) 		68.5
(-3) 		115.2
(0.8) 		142.9
(3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192464_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11960
Sequence Type Exemplar sequence
Representative Public ID ZK287.6 NCBI
Target Description ZK287.6 /REP_DB=WormBase Gene ID /WP=CE06615 /TR=Q23458 /GB=CAA94802.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (3 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073096(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073096 NCBI Caenorhabditis elegans ZK287.6 (ZK287.6) mRNA, complete cds. 11/11 None
SNAP00000034525 ENSEMBL cdna:SNAP chromosome:CEL140:V:9693731:9694719:-1 10/11 None
GENEFINDER00000034532 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9693731:9694719:-1 11/11 None
ZK287.6 ENSEMBL cdna:known chromosome:CEL140:V:9693731:9694719:-1 gene:ZK287.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9693730-9694719(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (3 domains)
Ensembl ZK287.6
Entrez Gene 191283 Entrez gene
SwissProt Q23458 EMBL-EBI
WormBase CE06615 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94802 Hypothetical protein ZK287.6 [Caenorhabditis elegans] ref|NP_505497.1| ZK287.6 [Caenorhabditis elegans] 1.0E-163
blast CAA94802 Hypothetical protein ZK287.6 [Caenorhabditis elegans] ref|NP_505497.1| ZK287.6 [Caenorhabditis elegans] 1.0E-160
blast CAE72230 Hypothetical protein CBG19343 [Caenorhabditis briggsae] 1.0E-110
blast CAE72230 Hypothetical protein CBG19343 [Caenorhabditis briggsae] 1.0E-107
blast CAE63001 Hypothetical protein CBG07238 [Caenorhabditis briggsae] 7.0E-44
blast CAE63001 Hypothetical protein CBG07238 [Caenorhabditis briggsae] 4.0E-43
Sequence
Target Sequence 
>C. ELEGANS:192464_AT
tatcgctacacaccggagttgagtatgaaaaagaaggaactgacccaaaagctcgaacgg
tgcattgcaatgagtcgatctatgcggattgaagggaaaatcagcgatgcggtgtcaagc
acagtggagaacagagtcaaagtcgaaaactcagaagcaactggcacacctattcagtca
tcttctcctgttgtcttcgtagataatgcttatcatgcctttctagacgaaactctggca
cgtcacgaagaagaacgtggagccggtccttcattcgagggagcatctgatggcggtggt
ccgatcaagccgaagcaacaaattcaatgttctctttgtggagacgttgtttccaaacaa
agatcaagcatggtgtatcatgcaaatacgcgtcacggaaaatatgagctctacgagtgc
ggaatctgtcacagaaaatggcagacaattgcaaaatctgatgtgatcaagcacataaaa
agccatcacgagagacccgacggaaccatcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCGCTACACACCGGAGTTGAGTA 645 657 217 Antisense
GGAACTGACCCAAAAGCTCGAACGG 138 529 252 Antisense
CTGGCACACCTATTCAGTCATCTTC 640 241 377 Antisense
TCTTCTCCTGTTGTCTTCGTAGATA 157 617 397 Antisense
AATGCTTATCATGCCTTTCTAGACG 696 165 421 Antisense
ACGAAACTCTGGCACGTCACGAAGA 455 55 443 Antisense
AGAAGAACGTGGAGCCGGTCCTTCA 5 5 465 Antisense
CCGGTCCTTCATTCGAGGGAGCATC 600 263 479 Antisense
AGCATCTGATGGCGGTGGTCCGATC 575 77 498 Antisense
GAGCTCTACGAGTGCGGAATCTGTC 323 387 622 Antisense
CGAGAGACCCGACGGAACCATCGAC 350 249 705 Antisense
Sequence Source Affymetrix Proprietary Database