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[192460_at] Zinc finger, C4 type (two domains)

Description K08H2.8 /REP_DB=WormBase Gene ID /WP=CE06166 /TR=Q21372 /GB=CAA94154.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 35      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 61      6grp_total > 35      4grp_total > 47      6grp_highest_sub > 02      6grp_cgc > 34      6grp_high1_sub > 02      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 645
1 2 3 4 range
A 924.5
(3)
P 		601.2
(-1.4)
P 		482.1
(-3)
P 		561.3
(-1.9)
P 		442
B 1007.2
(3)
P 		543.6
(-1.3)
P 		362.6
(-3)
P 		453
(-2.2)
P 		645
C 1006.2
(3)
P 		525.8
(-2.5)
P 		497.7
(-2.8)
P 		483
(-3)
P 		523
avr 979.3
(3) 		556.9
(-1.8) 		447.5
(-3) 		499.1
(-2.4) 		532

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 417.6
(-0.3)
P 		579.8
(3)
P 		405.3
(-0.5)
P 		338.9
(-1.8)
P 		280.7
(-3)
P 		404
(-0.5)
P 		299
B 400
(0.3)
P 		488.4
(2.9)
P 		492.7
(3)
P 		284.2
(-3)
P 		329.1
(-1.7)
P 		375.4
(-0.4)
P 		209
C 585.4
(3)
P 		480.4
(0.3)
P 		402.5
(-1.7)
P 		383.1
(-2.2)
P 		350.3
(-3)
P 		363.7
(-2.7)
P 		235
avr 467.7
(1.5) 		516.2
(3) 		433.5
(0.5) 		335.4
(-2.5) 		320
(-3) 		381
(-1.1) 		196
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 336.6
(3)
P 		130.5
(-1.9)
P 		126
(-2)
P 		82.2
(-3)
P 		254
B 321.2
(3)
P 		134.3
(-1.7)
P 		84
(-3)
P 		96.5
(-2.7)
P 		237
C 333.1
(3)
P 		151.2
(-1.3)
P 		173.4
(-0.8)
P 		81.4
(-3)
P 		252
avr 330.3
(3) 		138.7
(-1.7) 		127.8
(-2) 		86.7
(-3) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 77
(-3)
P 		206.2
(3)
P 		88.3
(-2.5)
P 		86
(-2.6)
P 		84.7
(-2.6)
P 		98.4
(-2)
P 		129
B 139.2
(1.4)
P 		162.6
(3)
P 		119.7
(0.1)
P 		75.3
(-3)
P 		133.7
(1)
P 		140
(1.4)
P 		87
C 217
(3)
P 		146.6
(-0)
P 		102.4
(-1.9)
P 		77
(-3)
P 		113.4
(-1.4)
P 		121.7
(-1.1)
P 		140
avr 144.4
(1.2) 		171.8
(3) 		103.5
(-1.4) 		79.4
(-3) 		110.6
(-1) 		120
(-0.4) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192460_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17922
Sequence Type Exemplar sequence
Representative Public ID K08H2.8 NCBI
Target Description K08H2.8 /REP_DB=WormBase Gene ID /WP=CE06166 /TR=Q21372 /GB=CAA94154.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077800(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077800 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-32) (nhr-32) mRNA, complete cds. 11/11 None
GENEFINDER00000000985 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13251896:13255919:1 11/11 None
SNAP00000000976 ENSEMBL cdna:SNAP chromosome:CEL140:X:13253442:13255919:1 11/11 None
K08H2.8 ENSEMBL cdna:known chromosome:CEL140:X:13251884:13256237:1 gene:K08H2.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13251693-13255919(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C4 type (two domains)
Gene Symbol nhr-32
Ensembl K08H2.8
Entrez Gene 187178 Entrez gene
SwissProt Q21372 EMBL-EBI
WormBase CE31557 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
4879 ligand-dependent nuclear receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94154 Hypothetical protein K08H2.8 [Caenorhabditis elegans] ref|NP_510201.2| Nuclear Hormone Receptor family member (nhr-32) [Caenorhabditis elegans] 0.0
blast AAO39173 nuclear receptor NHR-32 [Caenorhabditis elegans] 0.0
blast CAE61407 Hypothetical protein CBG05270 [Caenorhabditis briggsae] 2.0E-83
blast CAE61407 Hypothetical protein CBG05270 [Caenorhabditis briggsae] 3.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 5.0E-14
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.3E-36
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 5.0E-14
Sequence
Target Sequence 
>C. ELEGANS:192460_AT
acggacgtctccaagctatgagctcagcagtgatatgacctctcctggctccgcgttcac
accattgaatataaatttagcaacaaaacttctacgagcatttgcgctcaaatacatgct
gttagacaatgtttatcacacttatgaacttggctttcgagatcggttagtattggtcaa
caacaattatattgttcccggtgtaccgattaattttaaaggaagtgatgttgtggatga
aaatcaaatgagagatataatgttcggcgaacccatgcgtgctctaatcaatgagctggt
actgccgattggcagtcagaacatgttatatggagagattatgacgatacgaagaattat
gttttggaatcctggaaacgtacagctatctgaaatggcaaaagcgttatctgccgaagc
atgcaacgtcgctatgaaagaattgcaacagtatttaatatctgaaggagttgatgatat
tgaagctcggatcaagtttatacttctgttgcttccatcgtttacaactcatcacaagac
aatgtacgaaattgtgcggttaattccttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGACGTCTCCAAGCTATGAGCTC 138 95 402 Antisense
TCAGCAGTGATATGACCTCTCCTGG 404 623 425 Antisense
CTCCGCGTTCACACCATTGAATATA 154 235 450 Antisense
TTTGCGCTCAAATACATGCTGTTAG 289 669 502 Antisense
TGAACTTGGCTTTCGAGATCGGTTA 401 571 546 Antisense
ATTATATTGTTCCCGGTGTACCGAT 305 13 587 Antisense
AACCCATGCGTGCTCTAATCAATGA 80 147 671 Antisense
CAATGAGCTGGTACTGCCGATTGGC 121 183 690 Antisense
ATCTGCCGAAGCATGCAACGTCGCT 414 33 810 Antisense
GCTTCCATCGTTTACAACTCATCAC 220 307 912 Antisense
GAAATTGTGCGGTTAATTCCTTCTT 251 363 949 Antisense
Sequence Source Affymetrix Proprietary Database