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[192459_s_at] ADP-ribosylation factor

Description F20D1.5 /REP_DB=WormBase Gene ID /WP=CE09498 /GEN=arl-7 /TR=Q93536 /GB=CAB01746.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ADP-ribosylation factor
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 47      4grp_high_8_8 > 06      6grp_highest_nonorm > 90      6grp_total > 46      4grp_total > 02      6grp_highest_sub > Cu      6grp_cgc > 27      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 257
1 2 3 4 range
A 92.2
(-2.5)
A 		80.8
(-3)
P 		116.6
(-1.5)
P 		227.9
(3)
P 		147
B 68.1
(-3)
P 		110.9
(-2)
P 		92.3
(-2.4)
P 		325.5
(3)
P 		257
C 118.8
(-1.9)
P 		79.9
(-3)
P 		98.6
(-2.5)
P 		292
(3)
P 		212
avr 93
(-2.9) 		90.5
(-3) 		102.5
(-2.6) 		281.8
(3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 140.4
(-3)
P 		146.6
(-1.6)
P 		166.7
(3)
P 		156
(0.6)
P 		145.1
(-1.9)
P 		159
(1.2)
P 		26
B 161.5
(3)
P 		154.2
(1.9)
P 		159.1
(2.6)
P 		121.6
(-3)
P 		135.2
(-1)
P 		143.3
(0.3)
P 		40
C 166.1
(1.4)
P 		167.9
(1.6)
P 		114.8
(-3)
P 		132.1
(-1.5)
P 		126
(-2)
P 		184.5
(3)
P 		70
avr 156
(1.6) 		156.2
(1.6) 		146.9
(-0.4) 		136.6
(-2.7) 		135.4
(-3) 		162.3
(3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 33.6
(3)
A 		17.5
(-3)
P 		30.5
(1.8)
P 		33.4
(2.9)
P 		16
B 21.7
(-3)
P 		27.4
(-2.3)
P 		21.4
(-3)
P 		69.4
(3)
P 		48
C 39.3
(0.7)
P 		23
(-3)
P 		34.4
(-0.4)
P 		49.2
(3)
P 		26
avr 31.5
(-1.1) 		22.6
(-3) 		28.8
(-1.7) 		50.7
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 25.9
(-3)
P 		52.1
(3)
P 		36.3
(-0.6)
P 		39.6
(0.1)
P 		43.8
(1.1)
P 		38.7
(-0.1)
P 		26
B 56.2
(3)
P 		51.3
(1.8)
P 		38.6
(-1.4)
P 		32.2
(-3)
P 		54.9
(2.7)
P 		53.4
(2.3)
P 		24
C 61.6
(3)
P 		51.2
(1.2)
P 		29.2
(-2.6)
P 		26.6
(-3)
P 		40.8
(-0.6)
P 		61.7
(3)
P 		35
avr 47.9
(1.8) 		51.5
(3) 		34.7
(-2.4) 		32.8
(-3) 		46.5
(1.4) 		51.3
(2.9) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192459_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17413
Sequence Type Exemplar sequence
Representative Public ID F20D1.5 NCBI
Target Description F20D1.5 /REP_DB=WormBase Gene ID /WP=CE09498 /GEN=arl-7 /TR=Q93536 /GB=CAB01746.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ADP-ribosylation factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068841(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068841 NCBI Caenorhabditis elegans ADP-Ribosylation Factor related family member (arf-1.1) (arf-1.1) mRNA, complete cds. 11/11 A 
SNAP00000024165 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7634897:7635633:1 11/11 None
GENEFINDER00000024175 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7634897:7635633:1 11/11 None
F45E4.1 ENSEMBL cdna:known chromosome:CEL140:IV:7634897:7635633:1 gene:F45E4.1 11/11 A 
F20D1.5 ENSEMBL cdna:pseudogene chromosome:CEL140:X:14980870:14981591:-1 gene:F20D1.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040732 7/11 Cross Hyb Matching Probes None
GENEFINDER00000040739 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7634902-7635474(+) 95.43 95.43
chrX:14981034-14981591(-) 100.0 100.0
Public Domain and Genome References
Gene Title ADP-ribosylation factor
Gene Symbol arf-1.1
Ensembl F45E4.1
F20D1.5
Entrez Gene 191609 Entrez gene
SwissProt Q94231 EMBL-EBI
WormBase CE10492 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29813 Adp-ribosylation factor related protein 1.1 [Caenorhabditis elegans] ref|NP_501242.1| ADP-Ribosylation Factor related family member (arf-1.1) [Caenorhabditis elegans] sp|Q94231|ARL6_CAEEL ADP-ribosylation factor-like protein 1.0E-99
blast CAE61930 Hypothetical protein CBG05927 [Caenorhabditis briggsae] 2.0E-88
blast CAA52468 ADP-ribosylation factor 1 [Solanum tuberosum] sp|P51824|ARF1_SOLTU ADP-ribosylation factor 8.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR006689 EMBL-EBI ARF/SAR superfamily 2.0E-97
Sequence
Target Sequence 
>C. ELEGANS:192459_S_AT
gggcttattcttctctaaaatttcttccttcatgtttccaaatatcgaatgtcgattcaa
cgtggagactgttaccttccaaaaactcactctcattgtttgggatgttggaggtcagat
actaaaacactactttccaaataccacaatattagtgtttgtggtggacagttcggatat
tgagcggattcccgaggcaaaggaaaaattgttcagtttgctcgccgagccagagcttgc
ggattctcatctgcttgtctttgcaaacaagcaggatatgccgaatgcaagatcaccagc
cgagctgactcagctgcttgatttgggttcactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCTTATTCTTCTCTAAAATTTCT 275 477 15 Antisense
TAAAATTTCTTCCTTCATGTTTCCA 695 639 30 Antisense
CTTCCTTCATGTTTCCAAATATCGA 605 219 38 Antisense
CAACGTGGAGACTGTTACCTTCCAA 141 185 72 Antisense
GTGTTTGTGGTGGACAGTTCGGATA 137 487 169 Antisense
AGTTCGGATATTGAGCGGATTCCCG 103 65 184 Antisense
TTGAGCGGATTCCCGAGGCAAAGGA 680 705 194 Antisense
AACAAGCAGGATATGCCGAATGCAA 241 135 280 Antisense
CCGAATGCAAGATCACCAGCCGAGC 189 261 295 Antisense
CCAGCCGAGCTGACTCAGCTGCTTG 79 273 310 Antisense
CAGCTGCTTGATTTGGGTTCACTCA 287 203 325 Antisense
Sequence Source Affymetrix Proprietary Database