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[192457_s_at] Zinc finger, C2H2 type (6 domains)

Description F58G1.2 /REP_DB=WormBase Gene ID /WP=CE17922 /TR=O62276 /GB=CAB04525.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (6 domains)
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 97      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 93      6grp_total > 87      4grp_total > 12      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 404.9
(-0.8)
P 		333.9
(-3)
P 		339.4
(-2.8)
P 		531.1
(3)
P 		197
B 273.9
(-2.7)
P 		390.9
(-0.1)
P 		258.3
(-3)
P 		537.2
(3)
P 		279
C 439.9
(0.8)
P 		304.8
(-3)
P 		323.2
(-2.5)
P 		517.5
(3)
P 		213
avr 372.9
(-1.2) 		343.2
(-2) 		307
(-3) 		528.6
(3) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 477
1 2 3 4 5 6 range
A 336.9
(-2.2)
P 		326.7
(-2.3)
P 		273.1
(-3)
P 		404.5
(-1.3)
P 		506.8
(-0)
P 		747.2
(3)
P 		474
B 294.8
(-2.6)
P 		269.8
(-3)
P 		346.8
(-1.9)
P 		399.9
(-1.2)
P 		478
(-0)
P 		692.4
(3)
P 		423
C 328.1
(-3)
P 		328.9
(-3)
P 		406.9
(-1.7)
P 		440.6
(-1.2)
P 		572.8
(1)
P 		698.8
(3)
P 		371
avr 319.9
(-2.8) 		308.5
(-3) 		342.3
(-2.5) 		415
(-1.4) 		519.2
(0.1) 		712.8
(3) 		404
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 147.4
(3)
P 		72.5
(-3)
P 		88.7
(-1.7)
P 		77.7
(-2.6)
P 		75
B 87.3
(0)
P 		96.5
(1)
P 		59.9
(-3)
P 		114.5
(3)
P 		55
C 145.6
(3)
P 		87.6
(-3)
P 		112.7
(-0.4)
P 		87.3
(-3)
P 		58
avr 126.8
(3) 		85.5
(-3) 		87.1
(-2.8) 		93.2
(-1.9) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 62.1
(-2.9)
P 		116.2
(-0.2)
P 		59.5
(-3)
P 		102.6
(-0.9)
P 		152.9
(1.6)
P 		181.9
(3)
P 		122
B 102.6
(-2.4)
P 		89.8
(-2.8)
P 		84.2
(-3)
P 		105.9
(-2.3)
P 		194.2
(0.8)
P 		258.2
(3)
P 		174
C 121.6
(-1.6)
P 		100.4
(-2.5)
P 		103.6
(-2.4)
P 		88.6
(-3)
P 		185.4
(1)
P 		233.9
(3)
P 		145
avr 95.4
(-2.5) 		102.1
(-2.2) 		82.4
(-3) 		99
(-2.3) 		177.5
(1) 		224.7
(3) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192457_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2627
Sequence Type Exemplar sequence
Representative Public ID F58G1.2 NCBI
Target Description F58G1.2 /REP_DB=WormBase Gene ID /WP=CE17922 /TR=O62276 /GB=CAB04525.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (6 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064349(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064349 NCBI Caenorhabditis elegans F58G1.2 (F58G1.2) mRNA, complete cds. 11/11 None
SNAP00000003684 ENSEMBL cdna:SNAP chromosome:CEL140:II:12915487:12921810:-1 11/11 None
GENEFINDER00000003698 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12914645:12918877:-1 11/11 None
F58G1.2.1 ENSEMBL cdna:known chromosome:CEL140:II:12915339:12918674:-1 gene:F58G1.2 11/11 None
F58G1.2.2 ENSEMBL cdna:known chromosome:CEL140:II:12915339:12918680:-1 gene:F58G1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12915483-12917683(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (6 domains)
Ensembl F58G1.2
Entrez Gene 174931 Entrez gene
SwissProt O62276 EMBL-EBI
WormBase CE35561 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04525 Hypothetical protein F58G1.2 [Caenorhabditis elegans] ref|NP_496750.2| F58G1.2 [Caenorhabditis elegans] 0.0
blast CAE59395 Hypothetical protein CBG02756 [Caenorhabditis briggsae] 1.0E-176
blast CAE59395 Hypothetical protein CBG02756 [Caenorhabditis briggsae] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.0E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.0E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.0E-5
Sequence
Target Sequence 
>C. ELEGANS:192457_S_AT
aaccacctcacgaagaagcatccagaatgcgccgagttcgttcaatgtcttcactgcttc
aagtgtcttccatcggccgctgatcttccaactcatgactgtgatctcacatatctctgt
ctcgattgtcgtccgatccgtaacatgtgcaatggctaccgtctgttccgacaccgcacc
aagttccatcgtggctaccattccggtttccgctgcccagactgcaatcagaagttcttg
acgccaagaaagctgcgaaagcatcgcaaaatggctcatgtcttctcgcgaacgttccaa
tgtcatttctgcgaggaattcttcatttcggatacagctgtcactattcacgagcgtgtt
cacaccggaatcctgaagtttgagtgcacggtgtgcgactttagagctagcagatatctt
cagatggaagagcatacgaaggaacatcatggctacatgtgctccgtgtgccagctcaaa
tgtcaacactggaacgatatcaaggatcacatgttggccgagcactcgtgctatgttacc
gaagaagcttcacaagtctacatcgagtctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCACCTCACGAAGAAGCATCCAG 435 147 475 Antisense
GCATCCAGAATGCGCCGAGTTCGTT 498 307 492 Antisense
GAGTTCGTTCAATGTCTTCACTGCT 60 399 508 Antisense
ACATATCTCTGTCTCGATTGTCGTC 242 105 583 Antisense
GTCGTCCGATCCGTAACATGTGCAA 403 473 602 Antisense
ACATGTGCAATGGCTACCGTCTGTT 3 107 617 Antisense
CGGATACAGCTGTCACTATTCACGA 710 243 803 Antisense
ATCATGGCTACATGTGCTCCGTGTG 421 29 920 Antisense
TCCGTGTGCCAGCTCAAATGTCAAC 394 595 937 Antisense
GAGCACTCGTGCTATGTTACCGAAG 638 389 994 Antisense
GCTTCACAAGTCTACATCGAGTCTC 620 305 1021 Antisense
Sequence Source Affymetrix Proprietary Database