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[192452_at] Zinc finger, C2H2 type (3 domains)

Description C18D1.1 /REP_DB=WormBase Gene ID /WP=CE01501 /TR=Q09478 /GB=CAA88432.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (3 domains)
Cluster 6grp_high1_10_10 > 80      6grp_total > 91      4grp_total > 60      6grp_cgc > 97      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 146.5
(-0.2)
M 		171.4
(3)
A 		158.9
(1.4)
A 		124.3
(-3)
A 		47
B 151.6
(3)
P 		137
(1.7)
A 		144.8
(2.4)
A 		83.8
(-3)
A 		68
C 189.8
(3)
P 		168
(1.6)
A 		174
(2)
P 		93.5
(-3)
A 		96
avr 162.6
(3) 		158.8
(2.6) 		159.2
(2.7) 		100.5
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 222.4
(0.6)
P 		195
(-0.3)
P 		112
(-3)
A 		249.2
(1.4)
P 		297.1
(3)
P 		134.3
(-2.3)
P 		185
B 176.3
(-1.9)
P 		202.7
(-0.1)
P 		180.2
(-1.6)
A 		248.4
(3)
P 		210.6
(0.4)
P 		159.8
(-3)
P 		89
C 202.2
(0.8)
P 		211.6
(1.4)
P 		166.9
(-1.3)
P 		225.3
(2.2)
P 		237.6
(3)
P 		139.6
(-3)
P 		98
avr 200.3
(0.2) 		203.1
(0.4) 		153
(-2.5) 		241
(2.6) 		248.4
(3) 		144.6
(-3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 53.3
(3)
M 		37.2
(0.2)
A 		41.5
(1)
A 		18.2
(-3)
A 		35
B 48.3
(3)
P 		33.8
(0.1)
A 		33.5
(0.1)
A 		17.9
(-3)
A 		30
C 62.8
(3)
P 		48.3
(1.1)
A 		60.6
(2.7)
P 		15.8
(-3)
A 		47
avr 54.8
(3) 		39.8
(0.6) 		45.2
(1.5) 		17.3
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 41
(-1.5)
P 		69.3
(1.1)
P 		24.4
(-3)
A 		63.2
(0.6)
P 		89.7
(3)
P 		32.7
(-2.2)
P 		65
B 61.3
(-0.5)
P 		67.5
(0.4)
P 		43.8
(-3)
A 		65.8
(0.2)
P 		85.6
(3)
P 		59.6
(-0.7)
P 		42
C 75
(2.7)
P 		64.6
(0.9)
P 		42.5
(-3)
P 		45.3
(-2.5)
P 		76.9
(3)
P 		46.7
(-2.3)
P 		34
avr 59.1
(-0.2) 		67.1
(0.8) 		36.9
(-3) 		58.1
(-0.3) 		84.1
(3) 		46.3
(-1.8) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192452_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3276
Sequence Type Exemplar sequence
Representative Public ID C18D1.1 NCBI
Target Description C18D1.1 /REP_DB=WormBase Gene ID /WP=CE01501 /TR=Q09478 /GB=CAA88432.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (3 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063774(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063774 NCBI Caenorhabditis elegans Dorsal Intercalation and Elongation defect family member (die-1) (die-1) mRNA, complete cds. 11/11 None
SNAP00000007493 ENSEMBL cdna:SNAP chromosome:CEL140:II:10062016:10064392:-1 11/11 None
GENEFINDER00000007498 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10062016:10068547:-1 11/11 None
C18D1.1.2 ENSEMBL cdna:known chromosome:CEL140:II:10061238:10074354:-1 gene:C18D1.1 11/11 None
C18D1.1.1 ENSEMBL cdna:known chromosome:CEL140:II:10061238:10067891:-1 gene:C18D1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10062012-10067822(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (3 domains)
Gene Symbol die-1
Ensembl C18D1.1
Entrez Gene 174569 Entrez gene
SwissProt Q09478 EMBL-EBI
WormBase CE01501 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
3677 DNA binding inferred from sequence similarity QuickGO AmiGO
30528 transcription regulator activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88432 Hypothetical protein C18D1.1 [Caenorhabditis elegans] ref|NP_496175.1| Dorsal Intercalation and Elongation defect family member (die-1) [Caenorhabditis elegans] 0.0
blast CAE59348 Hypothetical protein CBG02697 [Caenorhabditis briggsae] 0.0
blast CAE59348 Hypothetical protein CBG02697 [Caenorhabditis briggsae] 1.0E-173
Sequence
Target Sequence 
>C. ELEGANS:192452_AT
aatgatggcgattctcggacaacgaaatcaatcaactgaggaaaagatgagctcaaatct
tctcgaatgtactgactgtagttacaagactcgtgatccaaagaatcttgacttgcacat
ggagaggcatatcaaaatgagtgaagcgaagggaagaggcgatgaagatgaggatgttgc
tctgcagctgacaactgaagcagctcttcaaatggtggttcagaatcagaatcaatatga
cggagattcaacggcagccgctctcaatcttacgttcaagaatgatggaacaaagaaaga
aattgaagaagagaaggcaactggaaatcatgagagaaactctcatacgagtggaagcat
ttctccctcaggatcaattccagaaggatttggaaagaacatcggagagaaggcgttccc
aacgcagagctttttgatcaagtgcaatgatgacagtggtgaattcctcaccgagttcct
tgctcaactgcctgtccgatcagtgatcgatggaccacgtcagctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGATGGCGATTCTCGGACAACGA 82 165 1386 Antisense
AATCTTCTCGAATGTACTGACTGTA 196 171 1441 Antisense
GGATGTTGCTCTGCAGCTGACAACT 72 515 1557 Antisense
AGCAGCTCTTCAAATGGTGGTTCAG 618 77 1584 Antisense
GATTCAACGGCAGCCGCTCTCAATC 281 431 1630 Antisense
ACGAGTGGAAGCATTTCTCCCTCAG 303 93 1732 Antisense
ATTTCTCCCTCAGGATCAATTCCAG 121 17 1744 Antisense
GTTCCCAACGCAGAGCTTTTTGATC 585 441 1800 Antisense
GTGGTGAATTCCTCACCGAGTTCCT 627 487 1841 Antisense
CTCAACTGCCTGTCCGATCAGTGAT 626 227 1868 Antisense
GTGATCGATGGACCACGTCAGCTGG 354 483 1888 Antisense
Sequence Source Affymetrix Proprietary Database