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[192451_s_at] Rat prostoglandin transporter like

Description F21G4.1 /REP_DB=WormBase Gene ID /WP=CE09547 /TR=Q93550 /GB=CAB02665.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Rat prostoglandin transporter like
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 61      6grp_total > 06      4grp_total > 62      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 535.9
(3)
P 		321.1
(-0.8)
P 		437.1
(1.3)
P 		196.5
(-3)
P 		339
B 481.8
(3)
P 		330.4
(-0.1)
P 		368.1
(0.7)
P 		189.9
(-3)
P 		292
C 465.3
(3)
P 		334
(-0.4)
P 		417.2
(1.8)
P 		230.6
(-3)
P 		235
avr 494.3
(3) 		328.5
(-0.4) 		407.5
(1.2) 		205.7
(-3) 		289

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 492
1 2 3 4 5 6 range
A 781
(3)
P 		439.1
(-1.4)
P 		438.1
(-1.4)
P 		412.9
(-1.8)
P 		458.5
(-1.2)
P 		316.7
(-3)
P 		464
B 588.5
(3)
P 		549.6
(2.1)
P 		376
(-1.7)
P 		405
(-1.1)
P 		318
(-3)
P 		409.2
(-1)
P 		271
C 467.8
(2)
P 		503.6
(3)
P 		430
(0.9)
P 		430.8
(1)
P 		289.2
(-3)
P 		339.7
(-1.6)
P 		214
avr 612.4
(3) 		497.4
(0.3) 		414.7
(-1.6) 		416.2
(-1.6) 		355.2
(-3) 		355.2
(-3) 		257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 195.1
(3)
P 		69.7
(-1.5)
P 		114.3
(0.1)
P 		28.8
(-3)
P 		166
B 153.6
(3)
P 		81.6
(-0.8)
P 		85.3
(-0.6)
P 		40.5
(-3)
P 		113
C 154
(3)
P 		96
(-0)
P 		145.4
(2.6)
P 		38.9
(-3)
P 		115
avr 167.6
(3) 		82.4
(-0.9) 		115
(0.6) 		36.1
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 144
(2.1)
P 		156.2
(3)
P 		95.4
(-1.6)
P 		104.7
(-0.9)
P 		138.3
(1.6)
P 		77.1
(-3)
P 		79
B 204.8
(3)
P 		182.9
(1.8)
P 		91.3
(-3)
P 		107.3
(-2.2)
P 		129.2
(-1)
P 		152.6
(0.2)
P 		114
C 173.4
(3)
P 		153.7
(1.6)
P 		109.4
(-1.4)
P 		86.6
(-3)
P 		93.6
(-2.5)
P 		113.7
(-1.1)
P 		87
avr 174.1
(3) 		164.3
(2.2) 		98.7
(-3) 		99.5
(-2.9) 		120.4
(-1.3) 		114.5
(-1.7) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192451_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16617
Sequence Type Exemplar sequence
Representative Public ID F21G4.1 NCBI
Target Description F21G4.1 /REP_DB=WormBase Gene ID /WP=CE09547 /TR=Q93550 /GB=CAB02665.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Rat prostoglandin transporter like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077258(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077258 NCBI Caenorhabditis elegans F21G4.1 (F21G4.1) mRNA, complete cds. 11/11 None
SNAP00000036629 ENSEMBL cdna:SNAP chromosome:CEL140:X:9889652:9890848:-1 11/11 None
GENEFINDER00000036639 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9889652:9892252:-1 11/11 None
F21G4.1.1 ENSEMBL cdna:known chromosome:CEL140:X:9889570:9892258:-1 gene:F21G4.1 11/11 None
F21G4.1.2 ENSEMBL cdna:known chromosome:CEL140:X:9889573:9892258:-1 gene:F21G4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9889651-9892501(-) 100.0 100.0
Public Domain and Genome References
Gene Title Rat prostoglandin transporter like
Ensembl F21G4.1
Entrez Gene 181203 Entrez gene
SwissProt Q93550 EMBL-EBI
WormBase CE37359 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.16330.1.S1_S_AT solute carrier organic anion transporter family, member 2A1 cfa
CHICKEN:GGA.8256.1.S1_AT similar to MGC68657 protein gga
CHICKEN:GGAAFFX.4022.1.S1_AT similar to MGC68657 protein gga
HG-U133_PLUS_2:204368_AT solute carrier organic anion transporter family, member 2A1 hs
HG-U133A:204368_AT solute carrier organic anion transporter family, member 2A1 hs
HG-FOCUS:204368_AT solute carrier organic anion transporter family, member 2A1 hs
HG-U133A_2:204368_AT solute carrier organic anion transporter family, member 2A1 hs
HUGENEFL:U70867_AT solute carrier organic anion transporter family, member 2A1 hs
U133_X3P:G5032094_3P_AT solute carrier organic anion transporter family, member 2A1 hs
HG-U95AV2:37919_AT solute carrier organic anion transporter family, member 2A1 hs
MU11KSUBB:MSA.30431.0_S_AT solute carrier organic anion transporter family, member 2a1 mm
MG-U74BV2:109371_AT solute carrier organic anion transporter family, member 2a1 mm
MOE430A:1420913_AT solute carrier organic anion transporter family, member 2a1 mm
MOUSE430A_2:1420913_AT solute carrier organic anion transporter family, member 2a1 mm
MOUSE430_2:1420913_AT solute carrier organic anion transporter family, member 2a1 mm
MOE430A:1450032_AT solute carrier organic anion transporter family, member 2a1 mm
MOUSE430A_2:1450032_AT solute carrier organic anion transporter family, member 2a1 mm
MOUSE430_2:1450032_AT solute carrier organic anion transporter family, member 2a1 mm
MOE430A:1420914_AT solute carrier organic anion transporter family, member 2a1 mm
MOUSE430A_2:1420914_AT solute carrier organic anion transporter family, member 2a1 mm
MOUSE430_2:1420914_AT solute carrier organic anion transporter family, member 2a1 mm
MU19KSUBA:TC16780_AT Solute carrier organic anion transporter family, member 2a1, mRNA (cDNA clone MGC:7145 IMAGE:3158233) mm
MU19KSUBA:TC17386_AT Solute carrier organic anion transporter family, member 2a1, mRNA (cDNA clone MGC:7145 IMAGE:3158233) mm
MU19KSUBB:TC29033_AT Solute carrier organic anion transporter family, member 2a1, mRNA (cDNA clone MGC:7145 IMAGE:3158233) mm
RG-U34A:M64862_AT solute carrier organic anion transporter family, member 2a1 rn
RAE230A:1387492_AT solute carrier organic anion transporter family, member 2a1 rn
RAT230_2:1387492_AT solute carrier organic anion transporter family, member 2a1 rn
RAE230A:1372889_AT Solute carrier organic anion transporter family, member 2a1 rn
RAT230_2:1372889_AT Solute carrier organic anion transporter family, member 2a1 rn
RG-U34A:RC_AA800797_AT Solute carrier organic anion transporter family, member 2a1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02665 Hypothetical protein F21G4.1 [Caenorhabditis elegans] ref|NP_509659.2| F21G4.1 [Caenorhabditis elegans] 0.0
blast CAE58731 Hypothetical protein CBG01917 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 1.0E-126
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 9.4E-113
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509659.2 12 19-41,56-78,85-107,159-181,193-215,240-262,288-310,325-347,359-381,472-491,512-534,563-585
F21G4.1.1 12 19-41,56-78,85-107,159-181,193-215,240-262,288-310,325-347,359-381,472-491,512-534,563-585
F21G4.1.2 12 19-41,56-78,85-107,159-181,193-215,240-262,288-310,325-347,359-381,472-491,512-534,563-585
SNAP00000036629 6 11-33,48-70,82-104,195-214,235-257,286-308
GENEFINDER00000036639 12 19-41,56-78,85-107,159-181,193-215,240-262,288-310,325-347,359-381,472-491,512-534,563-585
Sequence
Target Sequence 
>C. ELEGANS:192451_S_AT
gcaaaacttttattctccgtgtcatgcgggttgcacagagtacgatatttactcaaatac
gtggtcgaattgccaatgtgcctatgggaatatggtagacaaaggacttgtacatcccga
ttgtggaatattctttgcatatcttgctgtgatgttaattggactatttattggaaatct
gttctttatggttacaatgatgatagttctgaggagtgtatttgacgaagaaaaagttat
tgcattgagcttagcctctttcattacaaatctatttggattcattcccgcaccggtgat
ttacggcttctttattgatctgtgctgcattttatggaaccgccagtgccccaacgaacg
aggcaattgtgtgctctacgacaacgacatgttcacaaaaatgttccacggagtgaacag
ctttttccaagtatttgcaattatatttgccggcatttgttattggctctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAAACTTTTATTCTCCGTGTCAT 186 319 1479 Antisense
TCCGTGTCATGCGGGTTGCACAGAG 673 593 1494 Antisense
GTGGTCGAATTGCCAATGTGCCTAT 262 489 1539 Antisense
AGGACTTGTACATCCCGATTGTGGA 202 55 1581 Antisense
TTGCATTGAGCTTAGCCTCTTTCAT 453 701 1718 Antisense
ATCTATTTGGATTCATTCCCGCACC 245 31 1748 Antisense
CCGCACCGGTGATTTACGGCTTCTT 249 261 1766 Antisense
GGCTTCTTTATTGATCTGTGCTGCA 614 537 1783 Antisense
GCATTTTATGGAACCGCCAGTGCCC 392 307 1805 Antisense
GTGTGCTCTACGACAACGACATGTT 343 487 1847 Antisense
GCCGGCATTTGTTATTGGCTCTCCA 422 283 1927 Antisense
Sequence Source Affymetrix Proprietary Database