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[192450_at] calcium binding protein (weak)

Description F56D1.6 /REP_DB=WormBase Gene ID /WP=CE01974 /TR=SW:Q10131 /GB=AAA81096.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=calcium binding protein (weak)
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 28      4grp_high_8_8 > 12      6grp_highest_nonorm > 60      6grp_total > 28      4grp_total > 12      6grp_highest_sub > Cu      6grp_cgc > 06      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 594
1 2 3 4 range
A 355.5
(-0.3)
P 		230.5
(-2.1)
P 		173.8
(-3)
M 		572.6
(3)
P 		399
B 283.7
(-1.5)
P 		271.7
(-1.6)
P 		131.9
(-3)
P 		725.6
(3)
P 		594
C 369.2
(-0.5)
P 		282.1
(-1.7)
P 		183.5
(-3)
P 		637.1
(3)
P 		454
avr 336.1
(-0.8) 		261.4
(-1.8) 		163.1
(-3) 		645.1
(3) 		482

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 682
1 2 3 4 5 6 range
A 649.9
(3)
P 		412.3
(-0.5)
P 		325.3
(-1.7)
P 		239.5
(-3)
P 		313.1
(-1.9)
P 		406.9
(-0.6)
P 		410
B 751.1
(3)
P 		344.5
(-1.1)
P 		274.1
(-1.9)
P 		162.8
(-3)
P 		340.8
(-1.2)
P 		385.9
(-0.7)
P 		588
C 844.7
(3)
P 		397.4
(-1.1)
P 		193
(-3)
P 		258
(-2.4)
P 		217.9
(-2.8)
P 		487.8
(-0.3)
P 		652
avr 748.6
(3) 		384.7
(-1.1) 		264.1
(-2.5) 		220.1
(-3) 		290.6
(-2.2) 		426.9
(-0.7) 		529
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 129.4
(3)
P 		50
(-2.7)
P 		45.4
(-3)
M 		83.8
(-0.3)
P 		84
B 90.5
(-0.1)
P 		67.1
(-1.2)
P 		30.6
(-3)
P 		154.6
(3)
P 		124
C 122.2
(3)
P 		81.1
(-1.2)
P 		64
(-3)
P 		107.4
(1.5)
P 		58
avr 114
(2.9) 		66.1
(-1.3) 		46.7
(-3) 		115.3
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 119.8
(1.1)
P 		146.6
(3)
P 		70.8
(-2.3)
P 		60.8
(-3)
P 		94.5
(-0.6)
P 		99.1
(-0.3)
P 		86
B 261.4
(3)
P 		114.7
(-1)
P 		66.6
(-2.4)
P 		43.1
(-3)
P 		138.5
(-0.4)
P 		143.9
(-0.2)
P 		218
C 313.1
(3)
P 		121.3
(-1.4)
P 		49.1
(-3)
P 		51.9
(-2.9)
P 		70.5
(-2.5)
P 		163.3
(-0.4)
P 		264
avr 231.4
(3) 		127.5
(-0.5) 		62.2
(-2.7) 		51.9
(-3) 		101.2
(-1.4) 		135.4
(-0.2) 		180
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192450_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4598
Sequence Type Exemplar sequence
Representative Public ID F56D1.6 NCBI
Target Description F56D1.6 /REP_DB=WormBase Gene ID /WP=CE01974 /TR=SW:Q10131 /GB=AAA81096.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=calcium binding protein (weak)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062633(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062633 NCBI Caenorhabditis elegans CalEXcitin family member (cex-1) (cex-1) mRNA, complete cds. 11/11 None
SNAP00000013096 ENSEMBL cdna:SNAP chromosome:CEL140:II:5447653:5448410:1 11/11 None
GENEFINDER00000013107 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5447653:5448410:1 11/11 None
F56D1.6 ENSEMBL cdna:known chromosome:CEL140:II:5447653:5448410:1 gene:F56D1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5447650-5448408(+) 100.0 100.0
Public Domain and Genome References
Gene Title calcium binding protein (weak)
Gene Symbol cex-1
Ensembl F56D1.6
Entrez Gene 186376 Entrez gene
SwissProt Q10131 EMBL-EBI
WormBase CE01974 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1635398_AT Sarcoplasmic calcium-binding protein 2 dm
DROSGENOME1:143945_AT Sarcoplasmic calcium-binding protein 2 dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81096 Calexcitin protein 1 [Caenorhabditis elegans] ref|NP_495034.1| CalEXcitin family member (cex-1) [Caenorhabditis elegans] sp|Q10131|CEX1_CAEEL Putative calcium-binding protein cex-1 1.0E-118
blast CAE59107 Hypothetical protein CBG02402 [Caenorhabditis briggsae] 1.0E-111
blast AAC28940 calexcitin [Todarodes pacificus] 1.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.013
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.024
Sequence
Target Sequence 
>C. ELEGANS:192450_AT
aagcctacagcagcagtttccattgaagatcttatcaagaaacattccgatgttgatccg
ttccttgtcaagaagtgggaacgcattttctcactattttttgatagaaatgcttctcat
caagtcgattggggagatttttacttggttgtcaagaaagtccgtgacatttacggagct
gaatcagttcaaactggctttgccaagaaatctcttgctgctctctgggaaggactgtgc
tccattgctgatgctgataaggatcaattgatctcgattgatgaatggatcggacttttg
aagaagaccgatgcgaagactgaaccaaaatggttcaaggactatcagaactttatgttc
aaactttttgatgtttcctgtgatggagtcatggatcttgccgagtataccgatggaatg
agtacatatggatttgatcaatccgagtgtgatgcagctttccataagttttcagtggac
aagaaaggtcaatacgttccacaaatgaagccagagacctggaacacatacttccatcag
ttgttctactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCTACAGCAGCAGTTTCCATTG 291 149 25 Antisense
AACATTCCGATGTTGATCCGTTCCT 152 139 65 Antisense
GTGGGAACGCATTTTCTCACTATTT 304 489 99 Antisense
GAAATGCTTCTCATCAAGTCGATTG 537 361 131 Antisense
CAAGAAATCTCTTGCTGCTCTCTGG 348 185 228 Antisense
TGCTCTCTGGGAAGGACTGTGCTCC 127 581 243 Antisense
AGACCGATGCGAAGACTGAACCAAA 506 67 329 Antisense
GTCATGGATCTTGCCGAGTATACCG 407 467 412 Antisense
ATCCGAGTGTGATGCAGCTTTCCAT 378 39 465 Antisense
GCCAGAGACCTGGAACACATACTTC 683 279 534 Antisense
CATACTTCCATCAGTTGTTCTACTC 652 213 551 Antisense
Sequence Source Affymetrix Proprietary Database