[Home] | [Total List]

[192444_at]

Description T28B8.4 /REP_DB=WormBase Gene ID /WP=CE16519 /TR=O18150 /GB=CAB03445.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Human mRNA (KIAA0077) product like
Cluster 6grp_total > 76      4grp_total > 11      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 4
(-3)
A 		25.6
(-2.1)
A 		4.2
(-3)
A 		149.1
(3)
A 		145
B 23.1
(3)
A 		4.6
(-2.6)
A 		4.3
(-2.6)
A 		3.1
(-3)
A 		20
C 5.7
(-3)
A 		8.6
(-2.7)
A 		7.3
(-2.8)
A 		68.4
(3)
A 		63
avr 10.9
(-2.5) 		12.9
(-2.3) 		5.3
(-3) 		73.5
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 3.8
(-2.7)
A 		4.1
(-2.7)
A 		30.6
(3)
A 		2.6
(-3)
A 		3
(-2.9)
A 		23.7
(1.5)
A 		28
B 5.1
(-2.7)
A 		7.4
(-2.4)
A 		2.9
(-3)
A 		4.6
(-2.8)
A 		26.1
(0.2)
A 		46.8
(3)
A 		44
C 3.8
(-3)
A 		5.4
(-2.7)
A 		8.5
(-2.2)
A 		39.3
(3)
A 		9.4
(-2.1)
A 		29.7
(1.4)
A 		36
avr 4.2
(-3) 		5.6
(-2.7) 		14
(-1) 		15.5
(-0.7) 		12.8
(-1.2) 		33.4
(3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 1.5
(-2.9)
A 		5.6
(-1.7)
A 		1.1
(-3)
A 		21.8
(3)
A 		21
B 7.4
(3)
A 		1.1
(-2.6)
A 		1
(-2.7)
A 		0.7
(-3)
A 		7
C 1.9
(-3)
A 		2.5
(-2.6)
A 		2.5
(-2.6)
A 		11.5
(3)
A 		10
avr 3.6
(-1.7) 		3.1
(-2) 		1.5
(-3) 		11.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1.5
(-2.2)
A 		6.7
(3)
A 		0.7
(-3)
A 		0.9
(-2.8)
A 		5.8
(2.1)
A 		6
B 1.8
(-2.6)
A 		2.5
(-2.4)
A 		0.7
(-3)
A 		1.2
(-2.8)
A 		10.6
(0.5)
A 		17.5
(3)
A 		17
C 1.4
(-3)
A 		1.6
(-2.9)
A 		2.2
(-2.4)
A 		7.9
(1.5)
A 		3.1
(-1.8)
A 		10
(3)
A 		9
avr 1.3
(-3) 		1.9
(-2.6) 		3.2
(-1.8) 		3.3
(-1.8) 		4.9
(-0.8) 		11.1
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192444_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1112
Sequence Type Exemplar sequence
Representative Public ID T28B8.4 NCBI
Target Description T28B8.4 /REP_DB=WormBase Gene ID /WP=CE16519 /TR=O18150 /GB=CAB03445.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Human mRNA (KIAA0077) product like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000034050 ENSEMBL cdna:SNAP chromosome:CEL140:I:8172975:8176738:1 11/11 None
GENEFINDER00000034054 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8173066:8176738:1 11/11 None
T28B8.4 ENSEMBL cdna:known chromosome:CEL140:I:8169030:8176768:1 gene:T28B8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8168960-8176669(+) 100.0 100.0
Public Domain and Genome References
Ensembl T28B8.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T23130 hypothetical protein T28B8.4 - Caenorhabditis elegans 0.0
blast CAB03442 Hypothetical protein T28B8.3 [Caenorhabditis elegans] ref|NP_492232.2| T28B8.3 [Caenorhabditis elegans] 0.0
blast CAE60283 Hypothetical protein CBG03866 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034054 2 790-812,855-877
Sequence
Target Sequence 
>C. ELEGANS:192444_AT
gactttcacattccattcgggttcatggcgtgttcgattagctgttatcaagttcgttca
agcatctgtctactcaaatatatttccaatgagccaaaaacctagacgagataatatcga
aaagctattgttctgtgcaatttttgatggagagatatctgtgcggaaagaggcggcgaa
atgtcttctactatttattcattgctcatatattcaactttcggataaaaaaatcgacga
actcgcaaatattcttcactcaaaaacggaaccagaagtcattgctcatggtgcagcatt
tgctcttggagcatttgttctggccttcccattttccctaccaagcgagattctaaagcc
gttgagaattctaagttcaaccagttccaataaagctgcagtaaagcaaacaatgactga
gacagttcgagagtttcgtcgtcaacatcgtgatgattgggaagacacgaagaaagtatt
gggagacacactggtttttgatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTTCACATTCCATTCGGGTTCA 174 371 4815 Antisense
GGGTTCATGGCGTGTTCGATTAGCT 362 497 4833 Antisense
TTAGCTGTTATCAAGTTCGTTCAAG 461 681 4852 Antisense
TTCGTTCAAGCATCTGTCTACTCAA 658 695 4867 Antisense
AACTCGCAAATATTCTTCACTCAAA 368 141 5054 Antisense
ACGGAACCAGAAGTCATTGCTCATG 469 95 5080 Antisense
GCTCATGGTGCAGCATTTGCTCTTG 445 301 5098 Antisense
ATTTTCCCTACCAAGCGAGATTCTA 69 15 5145 Antisense
GAATTCTAAGTTCAACCAGTTCCAA 422 259 5180 Antisense
GAGAGTTTCGTCGTCAACATCGTGA 91 395 5243 Antisense
GGGAGACACACTGGTTTTTGATATT 593 495 5295 Antisense
Sequence Source Affymetrix Proprietary Database