[Home] | [Total List]

[192441_s_at]

Description F13B10.1B /REP_DB=WormBase Gene ID /WP=CE15818 /TR=O17802 /GB=CAA90181.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=SAM domain (Sterile alpha motif)
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 10      6grp_total > 16      4grp_total > 13      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1551
1 2 3 4 range
A 1419.8
(-0.6)
P 		1110.3
(-1.9)
P 		829
(-3)
P 		2320
(3)
P 		1491
B 1377.4
(0.1)
P 		802
(-3)
P 		926.7
(-2.3)
P 		1902.8
(3)
P 		1101
C 1535.7
(1.1)
P 		768.8
(-3)
P 		938.1
(-2.1)
P 		1880.7
(3)
P 		1112
avr 1444.3
(-0.1) 		893.7
(-3) 		897.9
(-3) 		2034.5
(3) 		1141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1608
1 2 3 4 5 6 range
A 2472
(3)
P 		1878
(0.7)
P 		920.5
(-2.9)
P 		906.3
(-3)
P 		1125.6
(-2.2)
P 		1127.3
(-2.2)
P 		1566
B 1974.7
(3)
P 		1564.7
(0.6)
P 		1367.5
(-0.5)
P 		1280.9
(-1)
P 		936.3
(-3)
P 		950.8
(-2.9)
P 		1038
C 2282.1
(3)
P 		1731.2
(0.7)
P 		1359.6
(-0.9)
P 		1000.8
(-2.4)
P 		1061
(-2.2)
P 		864.1
(-3)
P 		1418
avr 2242.9
(3) 		1724.6
(0.5) 		1215.9
(-1.9) 		1062.7
(-2.6) 		1041
(-2.7) 		980.7
(-3) 		1262
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 517
(3)
P 		241
(-2.5)
P 		216.7
(-3)
P 		339.6
(-0.5)
P 		300
B 439.2
(3)
P 		198.1
(-3)
P 		214.7
(-2.6)
P 		405.5
(2.2)
P 		241
C 508.3
(3)
P 		221
(-3)
P 		327
(-0.8)
P 		317.1
(-1)
P 		287
avr 488.2
(3) 		220
(-3) 		252.8
(-2.3) 		354.1
(0) 		268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 645
1 2 3 4 5 6 range
A 455.7
(0.3)
P 		667.9
(3)
P 		200.5
(-3)
P 		229.9
(-2.6)
P 		339.6
(-1.2)
P 		274.5
(-2.1)
P 		467
B 687.1
(3)
P 		520.8
(0.2)
P 		332.1
(-3)
P 		339.3
(-2.9)
P 		380.4
(-2.2)
P 		354.6
(-2.6)
P 		355
C 845.9
(3)
P 		528.2
(0)
P 		346
(-1.7)
P 		201.3
(-3)
P 		343.3
(-1.7)
P 		289.3
(-2.2)
P 		645
avr 662.9
(3) 		572.3
(1.7) 		292.9
(-2.5) 		256.8
(-3) 		354.4
(-1.6) 		306.1
(-2.3) 		406
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192441_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6740
Sequence Type Exemplar sequence
Representative Public ID F13B10.1B NCBI
Target Description F13B10.1B /REP_DB=WormBase Gene ID /WP=CE15818 /TR=O17802 /GB=CAA90181.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=SAM domain (Sterile alpha motif)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026082(11), NM_065384(11), NM_065383(11), NM_001026080(11), NM_001026081(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026082 NCBI Caenorhabditis elegans TIR (Toll and Interleukin 1 Receptor) domain protein family member (tir-1) (tir-1) mRNA, complete cds. 11/11 None
NM_065384 NCBI Caenorhabditis elegans TIR (Toll and Interleukin 1 Receptor) domain protein family member (tir-1) (tir-1) mRNA, complete cds. 11/11 None
NM_065383 NCBI Caenorhabditis elegans TIR (Toll and Interleukin 1 Receptor) domain protein family member (tir-1) (tir-1) mRNA, complete cds. 11/11 None
NM_001026080 NCBI Caenorhabditis elegans TIR (Toll and Interleukin 1 Receptor) domain protein family member (tir-1) (tir-1) mRNA, complete cds. 11/11 None
NM_001026081 NCBI Caenorhabditis elegans TIR (Toll and Interleukin 1 Receptor) domain protein family member (tir-1) (tir-1) mRNA, complete cds. 11/11 None
SNAP00000027269 ENSEMBL cdna:SNAP chromosome:CEL140:III:3870159:3871742:-1 11/11 None
GENEFINDER00000027278 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3870159:3873448:-1 11/11 None
F13B10.1e.3 ENSEMBL cdna:known chromosome:CEL140:III:3869569:3887585:-1 gene:F13B10.1 11/11 None
F13B10.1e.1 ENSEMBL cdna:known chromosome:CEL140:III:3869572:3901441:-1 gene:F13B10.1 11/11 None
F13B10.1e.2 ENSEMBL cdna:known chromosome:CEL140:III:3869585:3882700:-1 gene:F13B10.1 11/11 None
F13B10.1b ENSEMBL cdna:known chromosome:CEL140:III:3869595:3873499:-1 gene:F13B10.1 11/11 A 
F13B10.1a ENSEMBL cdna:known chromosome:CEL140:III:3870159:3890985:-1 gene:F13B10.1 11/11 None
F13B10.1c ENSEMBL cdna:known chromosome:CEL140:III:3870159:3887585:-1 gene:F13B10.1 11/11 None
F13B10.1d.2 ENSEMBL cdna:known chromosome:CEL140:III:3870159:3871610:-1 gene:F13B10.1 11/11 None
F13B10.1d.1 ENSEMBL cdna:known chromosome:CEL140:III:3870159:3871612:-1 gene:F13B10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3870158-3873472(-) 100.0 100.0
Public Domain and Genome References
Ensembl F13B10.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAV91313 Toll and interleukin 1 receptor domain protein isoform c [Caenorhabditis elegans] 0.0
blast AAV91312 Toll and interleukin 1 receptor domain protein isoform a [Caenorhabditis elegans] 0.0
blast CAE47467 Hypothetical protein F13B10.1e [Caenorhabditis elegans] ref|NP_001021253.1| TIR (Toll and Interleukin 1 Receptor) domain protein family member (tir-1) [Caenorhabditis elegans] 0.0
blast CAA90181 Hypothetical protein F13B10.1b [Caenorhabditis elegans] ref|NP_497785.1| TIR (Toll and Interleukin 1 Receptor) domain protein family member (tir-1) [Caenorhabditis elegans] 0.0
blast AAV91314 Toll and interleukin 1 receptor domain protein isoform f [Caenorhabditis elegans] 0.0
blast CAE60087 Hypothetical protein CBG03611 [Caenorhabditis briggsae] 0.0
blast CAA90182 Hypothetical protein F13B10.1a [Caenorhabditis elegans] ref|NP_497784.1| TIR (Toll and Interleukin 1 Receptor) domain protein family member (tir-1) [Caenorhabditis elegans] 0.0
blast CAD90174 Hypothetical protein F13B10.1c [Caenorhabditis elegans] ref|NP_001021251.1| TIR (Toll and Interleukin 1 Receptor) domain protein family member (tir-1) [Caenorhabditis elegans] sp|Q86DA5|SARM1_CAEEL Sterile alpha and TIR motif containing protein tir-1 (Neuronal symetry protein 2) (SARM1 homolog) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000157 EMBL-EBI TIR 8.0E-5
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 8.5E-21
Pfam IPR000157 EMBL-EBI TIR 8.0E-5
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 8.5E-21
Pfam IPR000157 EMBL-EBI TIR 8.0E-5
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 8.5E-21
Pfam IPR000157 EMBL-EBI TIR 8.0E-5
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 8.5E-21
Pfam IPR000157 EMBL-EBI TIR 8.0E-5
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 8.5E-21
Pfam IPR000157 EMBL-EBI TIR 8.0E-5
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 8.5E-21
Pfam IPR000157 EMBL-EBI TIR 8.0E-5
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 1.1E-9
Sequence
Target Sequence 
>C. ELEGANS:192441_S_AT
ggaaaccaactcgcaagtctcattaaagtactcctccaactccgcggatacagagtgttc
attgatgtcgataagttgtatgctggaaaattcgacagctcattgctcaagaacattcaa
gccgccaaacatttcatccttgttctcacaccaaacagtttggatagacttttaaatgat
gataactgtgaggattgggtgcacaaagagctgaaatgtgcatttgaacaccagaagaac
attattccaatctttgatactgcattcgaattcccaacaaaagaagatcaaattccgaat
gatattcgaatgattacaaagtataatggtgttaaatgggttcacgactatcaggatgca
tgtatggcaaaagttgtacgttttattactggagagttgaacagaacgacaccgaccacc
aaagaaatgccttctatctcccgaaaaactacccaacaacggtggcagaccacaaataca
gtaagccgtactgggccatccagaagcatcggtggaccaagaatggaacctcctacgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAACCAACTCGCAAGTCTCATTA 456 525 1144 Antisense
CTCATTAAAGTACTCCTCCAACTCC 178 227 1162 Antisense
AAATTCGACAGCTCATTGCTCAAGA 591 115 1231 Antisense
TCAAGCCGCCAAACATTTCATCCTT 38 633 1260 Antisense
ATCCTTGTTCTCACACCAAACAGTT 273 39 1279 Antisense
TGATACTGCATTCGAATTCCCAACA 397 565 1398 Antisense
TGGGTTCACGACTATCAGGATGCAT 6 555 1480 Antisense
ATGCCTTCTATCTCCCGAAAAACTA 309 37 1570 Antisense
CTACCCAACAACGGTGGCAGACCAC 502 225 1592 Antisense
AGCCGTACTGGGCCATCCAGAAGCA 23 83 1627 Antisense
GACCAAGAATGGAACCTCCTACGCC 160 383 1658 Antisense
Sequence Source Affymetrix Proprietary Database