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[192435_at] AIR synthase related proteins

Description Y45F10A.4 /REP_DB=WormBase Gene ID /WP=CE18395 /TR=SW:O62461 /GB=CAA16367.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=AIR synthase related proteins
Cluster 6grp_total > 0      4grp_total > 63      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 177.5
(3)
A 		62.8
(-3)
A 		103.7
(-0.9)
A 		140.7
(1.1)
A 		115
B 163.2
(3)
A 		140.8
(-0.3)
A 		129.3
(-2)
A 		122.3
(-3)
A 		41
C 213.8
(3)
A 		170
(1.3)
A 		176.9
(1.6)
A 		55.3
(-3)
A 		159
avr 184.8
(3) 		124.5
(-1.6) 		136.6
(-0.7) 		106.1
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 134.6
(-3)
A 		147.5
(-2.1)
A 		140.8
(-2.6)
A 		219.1
(3)
A 		151.9
(-1.8)
A 		146.9
(-2.1)
P 		85
B 192
(-0.6)
A 		224.5
(2)
A 		237.5
(3)
P 		160.9
(-3)
A 		230.4
(2.4)
A 		171.4
(-2.2)
P 		77
C 189
(-0.3)
A 		230.1
(3)
A 		155.1
(-3)
A 		219.6
(2.2)
M 		165.4
(-2.2)
A 		227
(2.8)
P 		75
avr 171.9
(-3) 		200.7
(3) 		177.8
(-1.8) 		199.9
(2.8) 		182.6
(-0.8) 		181.8
(-0.9) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 64.6
(3)
A 		13.6
(-3)
A 		27.1
(-1.4)
A 		20.6
(-2.2)
A 		51
B 52
(3)
A 		34.8
(-1)
A 		30
(-2.1)
A 		26.1
(-3)
A 		26
C 70.8
(3)
A 		48.9
(0.9)
A 		61.7
(2.1)
A 		9.3
(-3)
A 		62
avr 62.5
(3) 		32.4
(-1.1) 		39.6
(-0.1) 		18.7
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 24.8
(-3)
A 		52.4
(2.4)
A 		30.7
(-1.9)
A 		55.6
(3)
A 		45.8
(1.1)
A 		35.8
(-0.9)
P 		31
B 66.8
(-0.2)
A 		74.7
(0.8)
A 		57.7
(-1.2)
P 		42.6
(-3)
A 		93.6
(3)
A 		63.9
(-0.5)
P 		51
C 70
(2)
A 		70.2
(2)
A 		39.5
(-3)
A 		44.2
(-2.2)
M 		53.5
(-0.7)
A 		76
(3)
P 		37
avr 53.9
(-0.1) 		65.8
(3) 		42.6
(-3) 		47.5
(-1.7) 		64.3
(2.6) 		58.6
(1.1) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192435_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8419
Sequence Type Exemplar sequence
Representative Public ID Y45F10A.4 NCBI
Target Description Y45F10A.4 /REP_DB=WormBase Gene ID /WP=CE18395 /TR=SW:O62461 /GB=CAA16367.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=AIR synthase related proteins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070203(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070203 NCBI Caenorhabditis elegans Y45F10A.4 (Y45F10A.4) mRNA, complete cds. 11/11 None
SNAP00000021291 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13506048:13509019:1 11/11 None
GENEFINDER00000021299 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13506048:13509019:1 11/11 None
Y45F10A.4 ENSEMBL cdna:known chromosome:CEL140:IV:13506048:13509019:1 gene:Y45F10A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13506053-13508167(+) 93.2 100.0
Public Domain and Genome References
Gene Title AIR synthase related proteins
Ensembl Y45F10A.4
Entrez Gene 189912 Entrez gene
SwissProt O62461 EMBL-EBI
WormBase CE28704 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584329_AT similar to selenophosphate synthetase cfa
CANINE:1584328_AT similar to selenophosphate synthetase cfa
CANINE_2:CFA.408.1.A1_AT similar to selenophosphate synthetase cfa
CANINE_2:CFAAFFX.8046.1.S1_AT similar to selenophosphate synthetase cfa
CANINE_2:CFAAFFX.8046.1.S1_S_AT similar to selenophosphate synthetase cfa
DROSOPHILA_2:1628834_A_AT selenide,water dikinase dm
DROSGENOME1:142926_AT selenide,water dikinase dm
HG-U133A:208939_AT selenophosphate synthetase 1 hs
HG-U133A_2:208939_AT selenophosphate synthetase 1 hs
HG-FOCUS:208939_AT selenophosphate synthetase 1 hs
HG-U133_PLUS_2:208939_AT selenophosphate synthetase 1 hs
HG-U133A:208941_S_AT selenophosphate synthetase 1 hs
HG-U133A_2:208941_S_AT selenophosphate synthetase 1 hs
HG-U133_PLUS_2:208941_S_AT selenophosphate synthetase 1 hs
HU35KSUBC:RC_N62867_AT selenophosphate synthetase 1 hs
HU35KSUBD:RC_AA442256_AT selenophosphate synthetase 1 hs
HUGENEFL:U34044_AT selenophosphate synthetase 1 hs
U133_X3P:G12654242_3P_A_AT selenophosphate synthetase 1 hs
U133_X3P:HS.124027.1.A2_3P_AT selenophosphate synthetase 1 hs
HG-U133A:208940_AT Selenophosphate synthetase 1 hs
HG-U133A_2:208940_AT Selenophosphate synthetase 1 hs
HG-U133_PLUS_2:208940_AT Selenophosphate synthetase 1 hs
HU35KSUBD:RC_AA424179_AT Selenophosphate synthetase 1 hs
U133_X3P:HS.124027.1.A3_3P_AT Selenophosphate synthetase 1 hs
HG-U95AV2:39387_AT Selenophosphate synthetase 1 hs
MOE430A:1455511_AT selenophosphate synthetase 1 mm
MOUSE430A_2:1455511_AT selenophosphate synthetase 1 mm
MOUSE430_2:1455511_AT selenophosphate synthetase 1 mm
MG-U74AV2:94793_AT selenophosphate synthetase 1 mm
MG-U74BV2:111389_AT selenophosphate synthetase 1 mm
MOE430B:1433973_AT selenophosphate synthetase 1 mm
MOUSE430_2:1433973_AT selenophosphate synthetase 1 mm
MOE430B:1433974_AT selenophosphate synthetase 1 mm
MOUSE430_2:1433974_AT selenophosphate synthetase 1 mm
MOE430B:1454792_S_AT selenophosphate synthetase 1 mm
MOUSE430_2:1454792_S_AT selenophosphate synthetase 1 mm
MU19KSUBB:TC31250_AT Selenophosphate synthetase 1, mRNA (cDNA clone MGC:76356 IMAGE:6405661) mm
MU11KSUBA:D18343_RC_AT Selenophosphate synthetase 1, mRNA (cDNA clone MGC:76356 IMAGE:6405661) mm
RG-U34B:RC_AA998097_AT selenophosphate synthetase 1 (predicted) rn
RG-U34C:AA801070_AT selenophosphate synthetase 1 (predicted) rn
RG-U34C:RC_AI070739_AT selenophosphate synthetase 1 (predicted) rn
RAE230A:1389215_AT selenophosphate synthetase 1 (predicted) rn
RAT230_2:1389215_AT selenophosphate synthetase 1 (predicted) rn
RAE230B:1393256_AT selenophosphate synthetase 1 (predicted) rn
RAT230_2:1393256_AT selenophosphate synthetase 1 (predicted) rn
RAE230B:1385610_AT selenophosphate synthetase 1 (predicted) rn
RAT230_2:1385610_AT selenophosphate synthetase 1 (predicted) rn
RAE230B:1380362_AT Selenophosphate synthetase 1 (predicted) rn
RAT230_2:1380362_AT Selenophosphate synthetase 1 (predicted) rn
RAE230B:1381650_AT Selenophosphate synthetase 1 (predicted) rn
RAT230_2:1381650_AT Selenophosphate synthetase 1 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
4756 selenide, water dikinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16367 Hypothetical protein Y45F10A.4 [Caenorhabditis elegans] ref|NP_502604.1| Y45F10A.4 [Caenorhabditis elegans] sp|O62461|SELD_CAEEL Probable selenide, water dikinase (Selenophosphate synthetase) (Selenium donor protein) 0.0
blast T26910 hypothetical protein Y45F10A.4 - Caenorhabditis elegans 0.0
blast CAE58592 Hypothetical protein CBG01759 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010918 EMBL-EBI AIR synthase related protein, C-terminal 5.4E-10
Pfam IPR000728 EMBL-EBI AIR synthase related protein 1.9E-15
Sequence
Target Sequence 
>C. ELEGANS:192435_AT
gcaggcacaaagatccgtggtggccaaacagtccgttgtccttggcttctgctcggcgga
gttgccacttcagttgctcatgaatcagaaatcataaaagtagatcaagcagttcctgga
gatgttctgatattgactaaaccaattggaggccaggttgccgtgaactcgtacgaatgg
atcaaaaagaagaacggaaaaattgaagagctcaatctagaaattccaaaaatcgaaaaa
gcattcaaacaagtctgcgagcaaatgagccgtttgaatagaaatgcggcgaagcttctt
cacaaatacgatgctcattcttcaactgacgtcactggatttggacttctaggccacgcc
gagaatttggcgcgagttcaaaagcagccaatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGGCACAAAGATCCGTGGTGGCC 260 309 463 Antisense
CCAAACAGTCCGTTGTCCTTGGCTT 392 275 486 Antisense
GTTGCCACTTCAGTTGCTCATGAAT 68 441 523 Antisense
ACCAATTGGAGGCCAGGTTGCCGTG 432 83 603 Antisense
GGTTGCCGTGAACTCGTACGAATGG 53 507 618 Antisense
GAAATGCGGCGAAGCTTCTTCACAA 67 363 743 Antisense
GCTTCTTCACAAATACGATGCTCAT 674 305 756 Antisense
ATGCTCATTCTTCAACTGACGTCAC 50 43 773 Antisense
GTCACTGGATTTGGACTTCTAGGCC 527 465 793 Antisense
CTTCTAGGCCACGCCGAGAATTTGG 659 219 808 Antisense
GCGCGAGTTCAAAAGCAGCCAATGG 272 287 832 Antisense
Sequence Source Affymetrix Proprietary Database