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[192433_s_at] mitochondrial elongation factor TS

Description F55C5.5 /REP_DB=WormBase Gene ID /WP=CE11158 /TR=Q20819 /GB=CAB01570.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=mitochondrial elongation factor TS
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 09      4grp_high_8_8 > 61      6grp_highest_nonorm > 22      6grp_total > 40      4grp_total > 58      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1643
1 2 3 4 range
A 1733.9
(-0)
P 		2559.3
(3)
P 		2431.6
(2.5)
P 		919
(-3)
P 		1640
B 1558.7
(-0.5)
P 		2358.1
(2.7)
P 		2439.8
(3)
P 		916.4
(-3)
P 		1523
C 1702.6
(0.3)
P 		2023.5
(1.9)
P 		2260.9
(3)
P 		997
(-3)
P 		1264
avr 1665.1
(0) 		2313.6
(2.7) 		2377.4
(3) 		944.1
(-3) 		1433

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 948
1 2 3 4 5 6 range
A 2210.1
(3)
P 		1986.9
(1.5)
P 		1847.4
(0.6)
P 		1905.8
(1)
P 		1302.5
(-3)
P 		1383.8
(-2.5)
P 		908
B 1778.6
(3)
P 		1743.2
(2.6)
P 		1728.7
(2.4)
P 		1724.1
(2.4)
P 		1267.3
(-3)
P 		1340
(-2.1)
P 		511
C 1623.3
(-0.5)
P 		1949.7
(1.7)
P 		2134.5
(3)
P 		1920.1
(1.5)
P 		1261.8
(-3)
P 		1386.7
(-2.1)
P 		873
avr 1870.7
(2.7) 		1893.3
(2.9) 		1903.5
(3) 		1850
(2.5) 		1277.2
(-3) 		1370.2
(-2.1) 		626
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 654
1 2 3 4 range
A 631.3
(2.9)
P 		555.6
(2)
P 		635.7
(3)
P 		134.5
(-3)
P 		501
B 497.1
(1.7)
P 		582.4
(3)
P 		565.4
(2.7)
P 		195.3
(-3)
P 		387
C 563.6
(0.8)
P 		581.8
(1)
P 		788
(3)
P 		168.1
(-3)
P 		620
avr 564
(1.8) 		573.3
(1.9) 		663
(3) 		166
(-3) 		497

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 370
1 2 3 4 5 6 range
A 407.4
(-1.9)
P 		706.6
(3)
P 		402.3
(-1.9)
P 		483.4
(-0.6)
P 		393
(-2.1)
P 		336.9
(-3)
P 		370
B 618.9
(3)
P 		580.2
(1.8)
P 		419.8
(-3)
P 		456.7
(-1.9)
P 		514.9
(-0.1)
P 		499.7
(-0.6)
P 		199
C 601.7
(3)
P 		594.9
(2.8)
P 		543.3
(1.4)
P 		386.1
(-3)
P 		408.3
(-2.4)
P 		464.2
(-0.8)
P 		216
avr 542.7
(0.4) 		627.2
(3) 		455.1
(-2.3) 		442.1
(-2.7) 		438.7
(-2.8) 		433.6
(-3) 		194
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192433_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14141
Sequence Type Exemplar sequence
Representative Public ID F55C5.5 NCBI
Target Description F55C5.5 /REP_DB=WormBase Gene ID /WP=CE11158 /TR=Q20819 /GB=CAB01570.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=mitochondrial elongation factor TS
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073678(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073678 NCBI Caenorhabditis elegans F55C5.5 (F55C5.5) mRNA, complete cds. 11/11 None
SNAP00000005345 ENSEMBL cdna:SNAP chromosome:CEL140:V:12273002:12274137:-1 11/11 None
GENEFINDER00000005356 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12273002:12274137:-1 11/11 None
F55C5.5 ENSEMBL cdna:known chromosome:CEL140:V:12272859:12274139:-1 gene:F55C5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12273001-12274137(-) 100.0 100.0
Public Domain and Genome References
Gene Title mitochondrial elongation factor TS
Ensembl F55C5.5
Entrez Gene 179683 Entrez gene
SwissProt Q20819 EMBL-EBI
WormBase CE11158 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597009_AT similar to Elongation factor Ts, mitochondrial precursor (EF-Ts) (EF-TsMt) cfa
CANINE:1587157_S_AT similar to Elongation factor Ts, mitochondrial precursor (EF-Ts) (EF-TsMt) cfa
CANINE:1587156_AT similar to Elongation factor Ts, mitochondrial precursor (EF-Ts) (EF-TsMt) cfa
CANINE_2:CFA.10978.1.A1_AT similar to Elongation factor Ts, mitochondrial precursor (EF-Ts) (EF-TsMt) cfa
CANINE_2:CFAAFFX.11701.1.S1_S_AT similar to Elongation factor Ts, mitochondrial precursor (EF-Ts) (EF-TsMt) cfa
CANINE_2:CFAAFFX.1387.1.S1_AT similar to Elongation factor Ts, mitochondrial precursor (EF-Ts) (EF-TsMt) cfa
DROSOPHILA_2:1627749_AT dm
DROSGENOME1:142875_AT dm
HUGENEFL:L37936_AT Ts translation elongation factor, mitochondrial hs
U133_X3P:HS.3273.0.S1_3P_AT Ts translation elongation factor, mitochondrial hs
HG-U133A_2:212656_AT Ts translation elongation factor, mitochondrial hs
HG-U133_PLUS_2:212656_AT Ts translation elongation factor, mitochondrial hs
HG-U133A:212656_AT Ts translation elongation factor, mitochondrial hs
HG-U95AV2:39659_AT Ts translation elongation factor, mitochondrial hs
U133_X3P:HS.47344.2.A1_3P_X_AT Ts translation elongation factor, mitochondrial hs
U133_X3P:HS.47344.2.A1_3P_S_AT Ts translation elongation factor, mitochondrial hs
U133_X3P:HS.47344.2.A1_3P_AT Ts translation elongation factor, mitochondrial hs
U133_X3P:214331_3P_AT Ts translation elongation factor, mitochondrial hs
HG-U133A_2:214331_AT Ts translation elongation factor, mitochondrial hs
HG-U133_PLUS_2:214331_AT Ts translation elongation factor, mitochondrial hs
HG-U133A:214331_AT Ts translation elongation factor, mitochondrial hs
HG-U133A_2:214332_S_AT Ts translation elongation factor, mitochondrial hs
HG-U133_PLUS_2:214332_S_AT Ts translation elongation factor, mitochondrial hs
HG-U133A:214332_S_AT Ts translation elongation factor, mitochondrial hs
HG-U95AV2:41581_AT Ts translation elongation factor, mitochondrial hs
MOE430B:1432170_AT Ts translation elongation factor, mitochondrial mm
MOUSE430_2:1432170_AT Ts translation elongation factor, mitochondrial mm
MU11KSUBB:MSA.15767.0_S_AT Ts translation elongation factor, mitochondrial mm
MU11KSUBB:MSA.13350.0_S_AT Ts translation elongation factor, mitochondrial mm
MG-U74AV2:97403_AT Ts translation elongation factor, mitochondrial mm
MG-U74CV2:168185_I_AT Ts translation elongation factor, mitochondrial mm
MOE430B:1452698_AT Ts translation elongation factor, mitochondrial mm
MOUSE430_2:1452698_AT Ts translation elongation factor, mitochondrial mm
MU19KSUBB:TC29740_AT Ts translation elongation factor, mitochondrial, mRNA (cDNA clone IMAGE:5002677) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6414 translational elongation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3746 translation elongation factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01570 Hypothetical protein F55C5.5 [Caenorhabditis elegans] ref|NP_506079.1| F55C5.5 [Caenorhabditis elegans] dbj|BAA13470.1| elongation factor Ts homologue [Caenorhabditis elegans] 1.0E-160
blast CAE75435 Hypothetical protein CBG23428 [Caenorhabditis briggsae] 1.0E-139
blast XP_391904 PREDICTED: similar to ENSANGP00000010562 [Apis mellifera] 2.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 9.1E-8
Pfam IPR001816 EMBL-EBI Elongation factor Ts 3.3E-79
Sequence
Target Sequence 
>C. ELEGANS:192433_S_AT
tccaactctgttctcgcaaaagctaagccacaatctatatcgagcggctcaaaacttcaa
gaattcacctatgatcttggggatctgaccgattccgacggaaaaaatatgcgtgaagtg
ctctccctttcaatcggaaagcttggtgagaacatgacagtgagaagagttaaggctttt
aaagctcccgaaggaacaactttgtttggagcttcacatcctaaagatggaactgatgat
atcccgatgggacggttcatttcactcatcgctctaaatcaatcgagtccagggtcaatc
agtagtcagcaacttgccggacagatatgccagcacattatcggaatgtccccggaatcc
ctcggcgaagctgcagaatctgtgaaaactcaagaagggcttcgtagtcaagaagggcat
gatccaaatgctgatccagttgttgtaactaatattgatgaatcggaaactgctcttctc
cgccaagccttcatgttgaatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAACTCTGTTCTCGCAAAAGCTA 496 587 379 Antisense
TCTTGGGGATCTGACCGATTCCGAC 301 617 453 Antisense
AAATATGCGTGAAGTGCTCTCCCTT 106 117 483 Antisense
GTGCTCTCCCTTTCAATCGGAAAGC 8 479 496 Antisense
ATCCCGATGGGACGGTTCATTTCAC 122 39 619 Antisense
TTCATTTCACTCATCGCTCTAAATC 452 689 634 Antisense
GTCCAGGGTCAATCAGTAGTCAGCA 368 477 665 Antisense
ACTTGCCGGACAGATATGCCAGCAC 217 105 690 Antisense
AATCCCTCGGCGAAGCTGCAGAATC 101 169 734 Antisense
TGAATCGGAAACTGCTCTTCTCCGC 250 575 837 Antisense
TCCGCCAAGCCTTCATGTTGAATCC 76 597 857 Antisense
Sequence Source Affymetrix Proprietary Database