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[192432_at] testis-specific protein TPX-1 like

Description C39E9.4 /REP_DB=WormBase Gene ID /WP=CE05387 /TR=Q18538 /GB=CAA94330.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster 6grp_total > 05      4grp_total > 49      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 33.2
(-3)
A 		210.6
(3)
P 		176.9
(1.9)
P 		64.9
(-1.9)
A 		177
B 31.1
(-3)
A 		167.1
(1.5)
P 		212.9
(3)
P 		50.2
(-2.4)
A 		182
C 50.8
(-2.5)
A 		195.7
(3)
P 		174.1
(2.2)
P 		37.1
(-3)
A 		159
avr 38.4
(-3) 		191.1
(3) 		188
(2.9) 		50.7
(-2.5) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 21.8
(-2.4)
A 		77.3
(3)
A 		61.8
(1.5)
A 		16.1
(-3)
A 		37
(-1)
A 		32.2
(-1.4)
A 		61
B 56.9
(2.8)
A 		25.2
(-2.1)
A 		38.1
(-0.1)
A 		29.5
(-1.4)
A 		57.9
(3)
A 		19.5
(-3)
A 		38
C 76.5
(3)
P 		54.9
(1.2)
A 		31.1
(-0.7)
A 		25.2
(-1.2)
A 		66.8
(2.2)
A 		2.6
(-3)
A 		74
avr 51.7
(2.6) 		52.5
(2.8) 		43.7
(1.3) 		23.6
(-2.1) 		53.9
(3) 		18.1
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 12.1
(-2.6)
A 		45.7
(2.9)
P 		46.3
(3)
P 		9.5
(-3)
A 		37
B 9.9
(-3)
A 		41.3
(1.8)
P 		49.3
(3)
P 		10.7
(-2.9)
A 		39
C 16.8
(-1.8)
A 		56.3
(2.5)
P 		60.7
(3)
P 		6.3
(-3)
A 		54
avr 12.9
(-2.4) 		47.8
(2.4) 		52.1
(3) 		8.8
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 4
(-3)
A 		27.5
(3)
A 		13.5
(-0.6)
A 		4.1
(-3)
A 		11.2
(-1.2)
A 		7.8
(-2)
A 		24
B 19.8
(1.6)
A 		8.4
(-2.6)
A 		9.2
(-2.3)
A 		7.8
(-2.8)
A 		23.5
(3)
A 		7.3
(-3)
A 		16
C 28.4
(3)
P 		16.8
(0.5)
A 		7.9
(-1.5)
A 		5.1
(-2.1)
A 		21.6
(1.5)
A 		0.9
(-3)
A 		28
avr 17.4
(2.4) 		17.6
(2.5) 		10.2
(-0.8) 		5.7
(-2.8) 		18.8
(3) 		5.3
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192432_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10012
Sequence Type Exemplar sequence
Representative Public ID C39E9.4 NCBI
Target Description C39E9.4 /REP_DB=WormBase Gene ID /WP=CE05387 /TR=Q18538 /GB=CAA94330.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070107(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070107 NCBI Caenorhabditis elegans C39E9.4 (C39E9.4) mRNA, complete cds. 11/11 None
SNAP00000026303 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13068738:13069848:1 11/11 None
GENEFINDER00000026315 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13068738:13069848:1 11/11 None
C39E9.4 ENSEMBL cdna:known chromosome:CEL140:IV:13068738:13069848:1 gene:C39E9.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13068743-13069854(+) 100.0 100.0
Public Domain and Genome References
Gene Title testis-specific protein TPX-1 like
Ensembl C39E9.4
Entrez Gene 183343 Entrez gene
SwissProt Q18538 EMBL-EBI
WormBase CE05387 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94330 Hypothetical protein C39E9.4 [Caenorhabditis elegans] ref|NP_502508.1| C39E9.4 [Caenorhabditis elegans] 1.0E-121
blast CAE58666 Hypothetical protein CBG01835 [Caenorhabditis briggsae] 1.0E-92
blast CAE58675 Hypothetical protein CBG01849 [Caenorhabditis briggsae] 4.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 3.5E-57
Sequence
Target Sequence 
>C. ELEGANS:192432_AT
ttcttgtatttgctacttctcttctcattgttctcgttgatgctgagttcagctcgagca
ctcaacaattcatagttgaccttcataactcattccggtcgaaattggcaactggaactt
actctataaatggaacattgaagccagcaggaagtaacattagaaagatgtcctgggact
caaccctcgccacatctgctcaaacctacgcaaacacctgccccacaggattttcaaaca
ctcaaggaaccggagagaacctctactggcgtacgacatctgctaacatcagtggacttg
atatttatggaggagccgcgtctgtctcgtgggagcaagagttccagaagtacggatggg
caaccaactatttcagtcaggaactttttgatactggagtcggaaatggaactcaaatgg
cttgggctaaaacgaatcttgttggttgtggtgttaagaattgtggaaaagattcgactg
gtctcaataaagttgcagttgtatgtcactacaagcctcttggaagatacgtggaccaaa
tgatctacaccgctggcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTGTATTTGCTACTTCTCTTCT 254 689 23 Antisense
GTTCAGCTCGAGCACTCAACAATTC 325 443 69 Antisense
GTTGACCTTCATAACTCATTCCGGT 209 439 97 Antisense
AAAGATGTCCTGGGACTCAACCCTC 523 121 186 Antisense
CACATCTGCTCAAACCTACGCAAAC 104 197 213 Antisense
AAACACCTGCCCCACAGGATTTTCA 180 127 234 Antisense
TGGCGTACGACATCTGCTAACATCA 249 545 289 Antisense
ATTTATGGAGGAGCCGCGTCTGTCT 640 15 325 Antisense
GCGTCTGTCTCGTGGGAGCAAGAGT 106 293 340 Antisense
GATGGGCAACCAACTATTTCAGTCA 510 403 377 Antisense
CCAAATGATCTACACCGCTGGCTTC 382 275 558 Antisense
Sequence Source Affymetrix Proprietary Database