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[192431_at] Zinc finger, C4 type (two domains)

Description F44G3.9 /REP_DB=WormBase Gene ID /WP=CE16040 /TR=O45521 /GB=CAB05521.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_total > 53      4grp_total > 05      6grp_cgc > 92      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 44
(0.9)
A 		13.2
(-2.8)
A 		11.2
(-3)
A 		61.3
(3)
A 		50
B 23.7
(-0.9)
A 		34.7
(0.2)
A 		61.7
(3)
A 		3.1
(-3)
A 		59
C 37.7
(-1.8)
A 		15.4
(-3)
A 		21.5
(-2.7)
A 		127.3
(3)
A 		112
avr 35.1
(-1) 		21.1
(-3) 		31.5
(-1.5) 		63.9
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 12.9
(-2.3)
A 		2.9
(-3)
A 		92
(3)
A 		9.5
(-2.6)
A 		5.6
(-2.8)
A 		38.5
(-0.6)
A 		89
B 7.2
(-2.4)
A 		17.4
(1.9)
A 		7.8
(-2.1)
A 		19.9
(3)
A 		10.3
(-1.1)
A 		5.7
(-3)
A 		14
C 24.4
(0.2)
A 		20.1
(-0.6)
A 		10.2
(-2.5)
A 		38.8
(3)
A 		8.6
(-2.8)
A 		7.8
(-3)
A 		31
avr 14.8
(-1.6) 		13.5
(-1.9) 		36.7
(3) 		22.7
(0.1) 		8.2
(-3) 		17.3
(-1.1) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 16
(3)
A 		2.9
(-3)
A 		2.9
(-3)
A 		9
(-0.2)
A 		13
B 7.6
(0)
A 		8.6
(0.5)
A 		14.3
(3)
A 		0.7
(-3)
A 		14
C 12.5
(-0.2)
A 		4.4
(-3)
A 		7.5
(-1.9)
A 		21.5
(3)
A 		17
avr 12
(3) 		5.3
(-3) 		8.2
(-0.4) 		10.4
(1.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.4
(-2.6)
A 		1
(-3)
A 		20
(3)
A 		2.4
(-2.6)
A 		1.7
(-2.8)
A 		9.4
(-0.3)
A 		19
B 2.5
(-2.1)
A 		5.8
(3)
A 		1.9
(-3)
A 		5.3
(2.2)
A 		4.2
(0.5)
A 		2.1
(-2.7)
A 		4
C 9.1
(3)
A 		6.1
(0.2)
A 		2.6
(-3)
A 		7.8
(1.8)
A 		2.8
(-2.8)
A 		2.6
(-3)
A 		7
avr 4.7
(-1) 		4.3
(-1.4) 		8.2
(3) 		5.2
(-0.4) 		2.9
(-3) 		4.7
(-1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192431_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13020
Sequence Type Exemplar sequence
Representative Public ID F44G3.9 NCBI
Target Description F44G3.9 /REP_DB=WormBase Gene ID /WP=CE16040 /TR=O45521 /GB=CAB05521.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074659(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074659 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-111) (nhr-111) mRNA, complete cds. 11/11 None
SNAP00000003418 ENSEMBL cdna:SNAP chromosome:CEL140:V:16125638:16126583:-1 10/11 None
GENEFINDER00000003432 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16125339:16130077:-1 9/11 None
F44G3.9 ENSEMBL cdna:known chromosome:CEL140:V:16125638:16127364:-1 gene:F44G3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16125637-16127364(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C4 type (two domains)
Gene Symbol nhr-111
Ensembl F44G3.9
Entrez Gene 185757 Entrez gene
SwissProt O45521 EMBL-EBI
WormBase CE35538 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
4879 ligand-dependent nuclear receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 0.0
blast CAB05521 Hypothetical protein F44G3.9 [Caenorhabditis elegans] ref|NP_507060.2| Nuclear Hormone Receptor family member (nhr-111) [Caenorhabditis elegans] 1.0E-179
blast CAB05521 Hypothetical protein F44G3.9 [Caenorhabditis elegans] ref|NP_507060.2| Nuclear Hormone Receptor family member (nhr-111) [Caenorhabditis elegans] 1.0E-159
blast CAB05521 Hypothetical protein F44G3.9 [Caenorhabditis elegans] ref|NP_507060.2| Nuclear Hormone Receptor family member (nhr-111) [Caenorhabditis elegans] 1.0E-108
blast CAB60400 Hypothetical protein Y60A3A.15 [Caenorhabditis elegans] ref|NP_507858.1| Y60A3A.15 [Caenorhabditis elegans] 2.0E-87
blast CAB60400 Hypothetical protein Y60A3A.15 [Caenorhabditis elegans] ref|NP_507858.1| Y60A3A.15 [Caenorhabditis elegans] 3.0E-87
blast CAB60400 Hypothetical protein Y60A3A.15 [Caenorhabditis elegans] ref|NP_507858.1| Y60A3A.15 [Caenorhabditis elegans] 2.0E-76
blast T29238 hypothetical protein F56E3.4 - Caenorhabditis elegans 1.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 9.4E-37
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-51
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.8E-11
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 9.4E-37
Sequence
Target Sequence 
>C. ELEGANS:192431_AT
gaatgctgtgcaacccgagagaacttcccatagctacactgtagagtatgtcgagttgcc
ctcattccgagagtattccaagggacttctgcctactcactctgatcgtctcagattcca
acacgaacatgctcaacatgaaattgacacaagctccgtgctagttcatctgaaaaacgc
actccagtgggtgcaacagttttcgctcttcgcagtgctttccgatgttgaaaagagcca
gatcatactgacccagtggccacatcttttgtgcctcgcgttgttcgaaaactccgaaaa
aatcttcatcgatgaaaaatttgcacaactggctgagaaattcaaatccctcgaactttc
ggcgcaggattatttcctcttgaagggaattattattttcacggaaaccaaagatggcac
tgatctcaaattcgatcgccaacttgatatctgtatcggccttctcaatcagttgcacct
ggagtcttcaaagtccaaatctggaaggcttctatttctcctcggcgagcttaaatccta
ttctactagacagcttgaatctctcctggatcttaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCTGTGCAACCCGAGAGAACT 320 331 486 Antisense
CCGAGAGAACTTCCCATAGCTACAC 74 265 500 Antisense
AGTTGCCCTCATTCCGAGAGTATTC 120 65 539 Antisense
TATTCCAAGGGACTTCTGCCTACTC 105 665 559 Antisense
CCTACTCACTCTGATCGTCTCAGAT 191 269 577 Antisense
TCTTCGCAGTGCTTTCCGATGTTGA 579 617 692 Antisense
GAGCCAGATCATACTGACCCAGTGG 466 385 720 Antisense
GCCTCGCGTTGTTCGAAAACTCCGA 278 279 758 Antisense
GTTGCACCTGGAGTCTTCAAAGTCC 117 439 957 Antisense
CTCCTCGGCGAGCTTAAATCCTATT 353 229 1003 Antisense
GCTTGAATCTCTCCTGGATCTTAAA 368 307 1038 Antisense
Sequence Source Affymetrix Proprietary Database