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[192430_at] Zinc finger, C4 type (two domains)

Description K06B4.5 /REP_DB=WormBase Gene ID /WP=CE11790 /TR=O17932 /GB=CAB05765.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_total > 57      4grp_total > 09      6grp_cgc > 37      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 8.7
(-3)
A 		25.5
(3)
A 		9.2
(-2.8)
A 		16.1
(-0.4)
A 		17
B 14.4
(-1.7)
A 		8.7
(-2.9)
A 		36.8
(3)
A 		8.2
(-3)
A 		29
C 6.9
(-2.8)
A 		6.1
(-2.9)
A 		4.1
(-3)
A 		85.7
(3)
A 		82
avr 10
(-3) 		13.4
(-2.2) 		16.7
(-1.5) 		36.7
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2
(-3)
A 		3.5
(-2)
A 		2.5
(-2.7)
A 		10.6
(3)
A 		6.9
(0.4)
A 		10.4
(2.9)
A 		9
B 4.4
(-2.5)
A 		9.3
(-1.2)
A 		6.4
(-2)
A 		2.7
(-3)
A 		9.7
(-1.1)
A 		24.3
(3)
A 		22
C 17.5
(2.1)
A 		17.5
(2.1)
A 		7.5
(-1.3)
A 		20
(3)
A 		2.6
(-3)
A 		20
(3)
A 		17
avr 8
(-1.8) 		10.1
(-0.8) 		5.5
(-3) 		11.1
(-0.4) 		6.4
(-2.6) 		18.2
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.2
(-1.5)
A 		5.5
(3)
A 		2.4
(-3)
A 		2.4
(-3)
A 		3
B 4.6
(-0.4)
A 		2.2
(-2.6)
A 		8.5
(3)
A 		1.7
(-3)
A 		7
C 2.3
(-2.6)
A 		1.8
(-2.8)
A 		1.4
(-3)
A 		14.5
(3)
A 		13
avr 3.4
(-2.6) 		3.2
(-3) 		4.1
(-1.2) 		6.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.3
(-0.7)
A 		0.6
(-2.5)
A 		2.7
(3)
A 		2.1
(1.4)
A 		2.5
(2.5)
A 		2
B 1.5
(-2.4)
A 		3.1
(-1.3)
A 		1.6
(-2.4)
A 		0.7
(-3)
A 		4
(-0.6)
A 		9.1
(3)
A 		8
C 6.5
(2.8)
A 		5.3
(1.6)
A 		1.9
(-1.9)
A 		4
(0.3)
A 		0.8
(-3)
A 		6.7
(3)
A 		6
avr 2.8
(-1.2) 		3.2
(-0.7) 		1.4
(-3) 		2.5
(-1.6) 		2.3
(-1.9) 		6.1
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192430_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13203
Sequence Type Exemplar sequence
Representative Public ID K06B4.5 NCBI
Target Description K06B4.5 /REP_DB=WormBase Gene ID /WP=CE11790 /TR=O17932 /GB=CAB05765.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074499
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074499 NCBI Caenorhabditis elegans K06B4.5 (K06B4.5) mRNA, complete cds. None
K06B4.5 ENSEMBL cdna:known chromosome:CEL140:V:15688674:15690174:1 gene:K06B4.5 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010517 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15688673-15690174(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C4 type (two domains)
Gene Symbol nhr-196
Ensembl K06B4.5
Entrez Gene 187053 Entrez gene
SwissProt O17932 EMBL-EBI
WormBase CE35583 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05765 Hypothetical protein K06B4.5 [Caenorhabditis elegans] ref|NP_506900.2| K06B4.5 [Caenorhabditis elegans] 0.0
blast CAB05763 Hypothetical protein K06B4.6 [Caenorhabditis elegans] ref|NP_506902.1| K06B4.6 [Caenorhabditis elegans] 3.0E-81
blast CAB05764 Hypothetical protein K06B4.7 [Caenorhabditis elegans] ref|NP_506901.1| K06B4.7 [Caenorhabditis elegans] 3.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.3E-44
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.2E-9
Sequence
Target Sequence 
>C. ELEGANS:192430_AT
gcgaacgggaacaatggccagagcaatgaagtcagttctggaaaaaagatcaatactgat
atttcccaatgaggagaatatattcccggttgagatgaacacaatgtttgaaaactctga
cgttttagtgcatcaaatcgcacttcgaattgtggcaaagtttgctgaattgaggatgga
cagacgggaatatctcctgctgaaaatgattgatttttgtaattcagaaccaaaatttga
attaattcctcgtcaagccacattttcaagctcaaatgtgaaaatttctacatacaacat
tccaatgtctgcattttcagccatttccgataaattatcttaccatgcgaagaatatact
atcattccatcagaaagtgtacagttccgccttgctccagcattgtcaatttactaattc
gaggaccgctccaacgagattcactgaacttctttcggtgtttaacactattcataaaac
cgtgaataacatgagattttcttgtatgatggtgcaatgttttgttccgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAACGGGAACAATGGCCAGAGCA 633 285 510 Antisense
GCATCAAATCGCACTTCGAATTGTG 374 309 639 Antisense
GACAGACGGGAATATCTCCTGCTGA 217 367 688 Antisense
TGAATTAATTCCTCGTCAAGCCACA 25 573 747 Antisense
GTCAAGCCACATTTTCAAGCTCAAA 81 465 761 Antisense
ATGTCTGCATTTTCAGCCATTTCCG 224 49 814 Antisense
CAGAAAGTGTACAGTTCCGCCTTGC 342 193 880 Antisense
TACTAATTCGAGGACCGCTCCAACG 200 645 921 Antisense
CGCTCCAACGAGATTCACTGAACTT 547 255 936 Antisense
TTCACTGAACTTCTTTCGGTGTTTA 441 687 949 Antisense
GATGGTGCAATGTTTTGTTCCGAAT 28 409 1017 Antisense
Sequence Source Affymetrix Proprietary Database