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[192429_at] testis-specific protein TPX-1 like

Description C39E9.6 /REP_DB=WormBase Gene ID /WP=CE05389 /TR=Q18540 /GB=CAA94332.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster 6grp_total > 12      4grp_total > 37      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 31.3
(-1.2)
A 		56.6
(1.1)
A 		10.9
(-3)
A 		77.2
(3)
A 		66
B 51
(3)
A 		12
(-2.2)
A 		6.4
(-3)
A 		7.7
(-2.8)
A 		45
C 60.7
(3)
A 		26.1
(-1.7)
A 		25.7
(-1.8)
A 		16.7
(-3)
A 		44
avr 47.7
(3) 		31.6
(0.1) 		14.3
(-3) 		33.9
(0.5) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 61.6
(3)
A 		32.7
(-0.2)
A 		41.5
(0.8)
A 		21.5
(-1.4)
A 		39.4
(0.5)
A 		7.5
(-3)
A 		54
B 26.4
(-0.2)
A 		10.3
(-3)
A 		34.6
(1.2)
A 		39.8
(2.1)
A 		44.8
(3)
A 		25.3
(-0.4)
A 		35
C 49.7
(-0.5)
A 		110.6
(3)
A 		57.5
(-0.1)
A 		6.4
(-3)
A 		15.5
(-2.5)
A 		16.6
(-2.4)
A 		104
avr 45.9
(2.1) 		51.2
(3) 		44.5
(1.8) 		22.6
(-1.9) 		33.2
(-0.1) 		16.5
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 11.4
(2.4)
A 		12.3
(3)
A 		2.8
(-3)
A 		11.3
(2.4)
A 		10
B 16.3
(3)
A 		3
(-2.4)
A 		1.5
(-3)
A 		1.6
(-3)
A 		15
C 20.1
(3)
A 		7.5
(-1.4)
A 		9
(-0.8)
A 		2.8
(-3)
A 		17
avr 15.9
(3) 		7.6
(-1.3) 		4.4
(-3) 		5.2
(-2.6) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 11.4
(2.7)
A 		11.6
(2.8)
A 		9
(1.3)
A 		5.5
(-0.8)
A 		11.9
(3)
A 		1.8
(-3)
A 		10
B 9.2
(-0.6)
A 		3.4
(-3)
A 		8.4
(-1)
A 		10.5
(-0.1)
A 		18.2
(3)
A 		9.5
(-0.5)
A 		15
C 18.4
(0.2)
A 		33.7
(3)
A 		14.6
(-0.5)
A 		1.3
(-3)
A 		5
(-2.3)
A 		5.6
(-2.2)
A 		32
avr 13
(1.2) 		16.2
(3) 		10.7
(-0.1) 		5.8
(-2.9) 		11.7
(0.5) 		5.6
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192429_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8390
Sequence Type Exemplar sequence
Representative Public ID C39E9.6 NCBI
Target Description C39E9.6 /REP_DB=WormBase Gene ID /WP=CE05389 /TR=Q18540 /GB=CAA94332.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070109(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070109 NCBI Caenorhabditis elegans C39E9.6 (C39E9.6) mRNA, complete cds. 11/11 None
SNAP00000026305 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13071724:13072448:1 11/11 None
GENEFINDER00000026320 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13071724:13072448:1 11/11 None
C39E9.6 ENSEMBL cdna:known chromosome:CEL140:IV:13071724:13072448:1 gene:C39E9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13071729-13072454(+) 100.0 100.0
Public Domain and Genome References
Gene Title testis-specific protein TPX-1 like
Ensembl C39E9.6
Entrez Gene 183345 Entrez gene
SwissProt Q18540 EMBL-EBI
WormBase CE05389 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94332 Hypothetical protein C39E9.6 [Caenorhabditis elegans] ref|NP_502510.1| C39E9.6 [Caenorhabditis elegans] 1.0E-123
blast CAA94331 Hypothetical protein C39E9.5 [Caenorhabditis elegans] ref|NP_502509.1| C39E9.5 [Caenorhabditis elegans] 8.0E-85
blast CAE58665 Hypothetical protein CBG01834 [Caenorhabditis briggsae] 4.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 6.0E-59
Sequence
Target Sequence 
>C. ELEGANS:192429_AT
gacagctcccttgaacaatcagctcaaaactacgccaatgggtgtcacatgcagcattcc
accaacgacaaaaccatcggagagaacctctactgggagtggagtggcgatccattcagc
gatttggacaaattcggaaagatcgccacagttgcctgggatcacgagttcgagcaattc
ggatggaactcaaataagttttcacttgctctttttaacactggagttgcacatgctact
caaatcgcttgggcaccaactggtaagatcggatgtggagttaagaactgtggccgtgat
gctcgtcgcggtggattattccaggttgctattgtttgccaatacagagtccgaggaaac
ttcttcttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGCTCCCTTGAACAATCAGCTC 99 369 193 Antisense
GTGTCACATGCAGCATTCCACCAAC 579 485 234 Antisense
GAGTGGCGATCCATTCAGCGATTTG 555 401 294 Antisense
TCGGAAAGATCGCCACAGTTGCCTG 140 607 326 Antisense
ACAGTTGCCTGGGATCACGAGTTCG 688 107 340 Antisense
TTCACTTGCTCTTTTTAACACTGGA 615 685 393 Antisense
TGCACATGCTACTCAAATCGCTTGG 449 577 420 Antisense
TAAGAACTGTGGCCGTGATGCTCGT 13 639 474 Antisense
TGATGCTCGTCGCGGTGGATTATTC 142 567 489 Antisense
ATTCCAGGTTGCTATTGTTTGCCAA 657 7 510 Antisense
GAGTCCGAGGAAACTTCTTCTTCAA 627 397 539 Antisense
Sequence Source Affymetrix Proprietary Database