[Home] | [Total List]

[192425_at] testis-specific protein TPX-1 like

Description C39E9.1 /REP_DB=WormBase Gene ID /WP=CE05384 /TR=Q18542 /GB=CAA94334.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster 6grp_total > 60      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 1.9
(-3)
A 		3
(-2.8)
A 		5
(-2.5)
A 		42.8
(3)
A 		41
B 1.6
(-3)
A 		2
(-2.5)
A 		5.5
(1.4)
A 		6.9
(3)
A 		5
C 5.7
(-2.8)
A 		3.7
(-3)
A 		3.4
(-3)
A 		70.1
(3)
A 		67
avr 3.1
(-3) 		2.9
(-3) 		4.6
(-2.7) 		39.9
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 3.2
(-2.7)
A 		4.4
(-2.5)
A 		34.3
(3)
A 		5.9
(-2.2)
A 		1.8
(-3)
A 		2.1
(-2.9)
A 		33
B 2.8
(-2.7)
A 		3.3
(-2.5)
A 		3.9
(-2.4)
A 		27.4
(3)
A 		2.2
(-2.8)
A 		1.3
(-3)
A 		26
C 3
(-2.7)
A 		14.2
(-0.8)
A 		2.8
(-2.7)
A 		37.6
(3)
A 		2.1
(-2.8)
A 		1
(-3)
A 		37
avr 3
(-2.6) 		7.3
(-1.4) 		13.7
(0.3) 		23.6
(3) 		2
(-2.9) 		1.5
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.7
(-2.9)
A 		0.6
(-3)
A 		1.3
(-2.3)
A 		6.3
(3)
A 		6
B 0.5
(-3)
A 		0.5
(-3)
A 		1.3
(1.8)
A 		1.5
(3)
A 		1
C 1.9
(-2.6)
A 		1.1
(-3)
A 		1.2
(-2.9)
A 		11.8
(3)
A 		11
avr 1
(-2.7) 		0.7
(-3) 		1.3
(-2.4) 		6.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.6
(-2.9)
A 		1.6
(-2.1)
A 		7.5
(3)
A 		1.5
(-2.1)
A 		0.5
(-3)
A 		0.5
(-3)
A 		7
B 1
(-2.6)
A 		1.1
(-2.5)
A 		0.9
(-2.6)
A 		7.3
(3)
A 		0.9
(-2.6)
A 		0.5
(-3)
A 		7
C 1.1
(-2.3)
A 		4.3
(0.3)
A 		0.7
(-2.7)
A 		7.6
(3)
A 		0.7
(-2.7)
A 		0.3
(-3)
A 		7
avr 0.9
(-2.4) 		2.3
(-0.8) 		3
(0.1) 		5.5
(3) 		0.7
(-2.6) 		0.4
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192425_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9030
Sequence Type Exemplar sequence
Representative Public ID C39E9.1 NCBI
Target Description C39E9.1 /REP_DB=WormBase Gene ID /WP=CE05384 /TR=Q18542 /GB=CAA94334.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070104(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070104 NCBI Caenorhabditis elegans C39E9.1 (C39E9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000026327 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13061744:13063749:1 10/11 None
C39E9.1 ENSEMBL cdna:known chromosome:CEL140:IV:13061744:13063173:1 gene:C39E9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026299 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13061749-13063179(+) 100.0 100.0
Public Domain and Genome References
Gene Title testis-specific protein TPX-1 like
Ensembl C39E9.1
Entrez Gene 183342 Entrez gene
SwissProt Q18542 EMBL-EBI
WormBase CE05384 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94334 Hypothetical protein C39E9.1 [Caenorhabditis elegans] ref|NP_502505.1| C39E9.1 [Caenorhabditis elegans] 1.0E-108
blast CAA94334 Hypothetical protein C39E9.1 [Caenorhabditis elegans] ref|NP_502505.1| C39E9.1 [Caenorhabditis elegans] 5.0E-87
blast CAA94341 Hypothetical protein F49E11.11 [Caenorhabditis elegans] emb|CAA94354.1| Hypothetical protein F49E11.11 [Caenorhabditis elegans] ref|NP_502504.1| F49E11.11 [Caenorhabditis elegans] 9.0E-46
blast CAE58675 Hypothetical protein CBG01849 [Caenorhabditis briggsae] 6.0E-40
blast CAA94341 Hypothetical protein F49E11.11 [Caenorhabditis elegans] emb|CAA94354.1| Hypothetical protein F49E11.11 [Caenorhabditis elegans] ref|NP_502504.1| F49E11.11 [Caenorhabditis elegans] 4.0E-32
blast CAE58675 Hypothetical protein CBG01849 [Caenorhabditis briggsae] 6.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 1.0E-31
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 4.6E-29
Sequence
Target Sequence 
>C. ELEGANS:192425_AT
actggcaataggtagctctgctcaatttgtggcaaatacccaacaatttatagtggatat
tcacaacacgtttcgttcaaagcttgcactgggaacttatgtatcgaagggtgtgacgaa
gccagcagcaaaaattgaacatcacactgactgtctcagctcaagcctacgcaaacacat
gcccaaaaaatcactcgaatctcgagttggggaaaatatctactatagatacaccactgc
gccattttccggtatgaatgtttatggcggagctgcgtcagtcgcatgggagcaagaagt
tcagagaaatgaatggccatcgaatataatctcaatcgatgttttgctcgtgaccgatga
actcagaatcattttgcacgcaacacaaatggcatgggcaacatctggacagattggatg
tggagttaaaaattgtggaaaggatatgccagatagaccaacttttaatcgaggagtcgt
tgtaggtaacataatcaaccagcaagtgtatcaaaccgggccaacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGGCAATAGGTAGCTCTGCTCAA 79 97 48 Antisense
GGATATTCACAACACGTTTCGTTCA 434 509 102 Antisense
GTTTCGTTCAAAGCTTGCACTGGGA 230 451 117 Antisense
CGAAGGGTGTGACGAAGCCAGCAGC 673 251 152 Antisense
AACATCACACTGACTGTCTCAGCTC 119 137 185 Antisense
TCAGCTCAAGCCTACGCAAACACAT 494 625 203 Antisense
CTACTATAGATACACCACTGCGCCA 432 225 267 Antisense
CTGCGCCATTTTCCGGTATGAATGT 574 235 284 Antisense
GTTTTGCTCGTGACCGATGAACTCA 201 449 388 Antisense
GAACTCAGAATCATTTTGCACGCAA 630 349 406 Antisense
CAAGTGTATCAAACCGGGCCAACCT 618 183 550 Antisense
Sequence Source Affymetrix Proprietary Database