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[192424_s_at]

Description D2030.9A /REP_DB=WormBase Gene ID /WP=CE09086 /TR=SW:P90794 /GB=CAA98121.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lithosperm lec14B protein like
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 86      6grp_total > 38      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1555
1 2 3 4 range
A 1574.7
(1.4)
P 		655.4
(-3)
P 		699.9
(-2.8)
P 		1899.7
(3)
P 		1244
B 1350.3
(-0.6)
P 		791.5
(-2.9)
P 		776.8
(-3)
P 		2210.5
(3)
P 		1434
C 1535.6
(0.6)
P 		794.5
(-3)
P 		865.1
(-2.7)
P 		2026.3
(3)
P 		1232
avr 1486.9
(0.4) 		747.1
(-3) 		780.6
(-2.8) 		2045.5
(3) 		1298

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1360
1 2 3 4 5 6 range
A 927.7
(-0.1)
P 		1414.6
(3)
P 		465
(-3)
P 		932.8
(-0)
P 		737.3
(-1.3)
P 		1296.4
(2.3)
P 		950
B 1144.3
(3)
P 		775.9
(-0.7)
P 		550.7
(-3)
P 		596.6
(-2.5)
P 		807.4
(-0.4)
P 		854.7
(0.1)
P 		594
C 1825.1
(3)
P 		717.9
(-2.9)
P 		1006.2
(-1.3)
P 		691.4
(-3)
P 		1027.4
(-1.2)
P 		938.3
(-1.7)
P 		1134
avr 1299
(3) 		969.5
(-0.2) 		674
(-3) 		740.3
(-2.4) 		857.4
(-1.2) 		1029.8
(0.4) 		625
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 431
1 2 3 4 range
A 573.4
(3)
P 		142.3
(-3)
P 		183
(-2.4)
P 		278.1
(-1.1)
P 		431
B 430.6
(2.2)
P 		195.5
(-2.7)
P 		180
(-3)
P 		471.1
(3)
P 		291
C 508.3
(3)
P 		228.4
(-3)
P 		301.5
(-1.4)
P 		341.7
(-0.6)
P 		280
avr 504.1
(3) 		188.7
(-3) 		221.5
(-2.4) 		363.6
(0.3) 		315

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 575
1 2 3 4 5 6 range
A 171
(-2)
P 		503.1
(3)
P 		101.3
(-3)
P 		236.6
(-1)
P 		222.5
(-1.2)
P 		315.6
(0.2)
P 		402
B 398.2
(3)
P 		258.3
(-0.2)
P 		133.7
(-3)
P 		158
(-2.4)
P 		328
(1.4)
P 		318.7
(1.2)
P 		265
C 676.5
(3)
P 		219
(-2.1)
P 		256.1
(-1.7)
P 		139
(-3)
P 		332.5
(-0.8)
P 		314.1
(-1)
P 		538
avr 415.2
(3) 		326.8
(0.9) 		163.7
(-3) 		177.9
(-2.7) 		294.3
(0.1) 		316.1
(0.6) 		252
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192424_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.957
Sequence Type Exemplar sequence
Representative Public ID D2030.9A NCBI
Target Description D2030.9A /REP_DB=WormBase Gene ID /WP=CE09086 /TR=SW:P90794 /GB=CAA98121.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lithosperm lec14B protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059723(11), NM_059724(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059723 NCBI Caenorhabditis elegans D2030.9a (D2030.9) mRNA, complete cds. 11/11 None
NM_059724 NCBI Caenorhabditis elegans D2030.9b (D2030.9) mRNA, complete cds. 11/11 None
GENEFINDER00000031289 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7604653:7610030:1 11/11 None
SNAP00000031280 ENSEMBL cdna:SNAP chromosome:CEL140:I:7606367:7610030:1 11/11 None
D2030.9a.1 ENSEMBL cdna:known chromosome:CEL140:I:7604632:7610326:1 gene:D2030.9 11/11 None
D2030.9a.2 ENSEMBL cdna:known chromosome:CEL140:I:7604634:7610312:1 gene:D2030.9 11/11 None
D2030.9b ENSEMBL cdna:known chromosome:CEL140:I:7605197:7610030:1 gene:D2030.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7604583-7609961(+) 100.0 100.0
Public Domain and Genome References
Ensembl D2030.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98121 Hypothetical protein D2030.9a [Caenorhabditis elegans] ref|NP_492124.1| D2030.9a [Caenorhabditis elegans] sp|P90794|YRIQ_CAEEL Hypothetical WD-repeat protein D2030.9 in chromosome I 0.0
blast CAB54209 Hypothetical protein D2030.9b [Caenorhabditis elegans] ref|NP_492125.1| D2030.9b [Caenorhabditis elegans] 0.0
blast CAE66619 Hypothetical protein CBG11954 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.097
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.0E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.8E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.28
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.7E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.097
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.0E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.8E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.28
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.7E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.097
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.0E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.8E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.28
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.7E-7
Sequence
Target Sequence 
>C. ELEGANS:192424_S_AT
ggagtggaagctacacgtgcgtgcgttcagagtcaacactgggactatcgatggcagcct
gcaccacctggattatgtcaacctgttgccggagatacgtctgttatgacactacgtgga
catagtgttctgcatacattggttcgagcgaatttctcaccggaaagcactggacggcgg
tatatttatacgggatgcgccagaggcgaagttgttgtatacgacataatgagtggtaca
gtgagccgccgcctgaaaggtcatacagctgtggttagagaatgtgattggcatccaaca
gagaacgagattgttagtagtgcgtgggacggagtgacaacagtctggacatgggatgaa
cgtcaggaaggagtcattgcaccatacgatcatcccaatatttctcagtttggcgacgaa
gattcgtgtgatgagctcttccaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTGGAAGCTACACGTGCGTGCG 303 517 1198 Antisense
GTGCGTGCGTTCAGAGTCAACACTG 241 479 1214 Antisense
CACTGGGACTATCGATGGCAGCCTG 353 199 1234 Antisense
GCACCACCTGGATTATGTCAACCTG 19 315 1258 Antisense
GTCAACCTGTTGCCGGAGATACGTC 535 463 1274 Antisense
GTGTTCTGCATACATTGGTTCGAGC 636 483 1322 Antisense
GGTTCGAGCGAATTTCTCACCGGAA 495 507 1338 Antisense
AATGAGTGGTACAGTGAGCCGCCGC 495 163 1425 Antisense
GAGTCATTGCACCATACGATCATCC 138 401 1568 Antisense
ACGATCATCCCAATATTTCTCAGTT 708 93 1583 Antisense
GATTCGTGTGATGAGCTCTTCCAAC 232 433 1618 Antisense
Sequence Source Affymetrix Proprietary Database