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[192423_s_at] hydrophobic nucleolar protein like

Description ZK809.4 /REP_DB=WormBase Gene ID /WP=CE18465 /TR=Q23599 /GB=CAA92642.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=hydrophobic nucleolar protein like
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_highest_nonorm > 98      6grp_total > 96      4grp_total > 48      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 446
1 2 3 4 range
A 847.2
(-3)
P 		1234.5
(2.4)
P 		1278.6
(3)
P 		926.6
(-1.9)
P 		431
B 1047.3
(-1)
P 		990.5
(-3)
P 		1162.9
(3)
P 		1040.1
(-1.3)
P 		172
C 832.6
(-3)
P 		1051.3
(1.9)
P 		1101.5
(3)
P 		994.2
(0.6)
P 		269
avr 909
(-3) 		1092.1
(1) 		1181
(3) 		987
(-1.3) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1628
1 2 3 4 5 6 range
A 724.5
(-3)
P 		943.1
(-2.2)
P 		798.6
(-2.7)
P 		1203.7
(-1.2)
P 		1519.1
(0.1)
P 		2285.9
(3)
P 		1561
B 714.1
(-2.7)
P 		875.6
(-1.6)
P 		658.4
(-3)
P 		1232.4
(0.6)
P 		1305.9
(1)
P 		1619.1
(3)
P 		961
C 808.8
(-3)
P 		861.7
(-2.6)
P 		1104.9
(-1)
P 		1116.9
(-0.9)
P 		1438.9
(1.4)
P 		1675.5
(3)
P 		867
avr 749.1
(-3) 		893.5
(-2.2) 		854
(-2.4) 		1184.3
(-0.6) 		1421.3
(0.6) 		1860.2
(3) 		1111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 308.5
(2.2)
P 		268
(1)
P 		334.2
(3)
P 		135.6
(-3)
P 		199
B 334
(3)
P 		244.6
(-1.8)
P 		269.5
(-0.4)
P 		221.7
(-3)
P 		112
C 275.6
(-0)
P 		302.3
(0.7)
P 		383.9
(3)
P 		167.6
(-3)
P 		216
avr 306
(2.1) 		271.6
(0.8) 		329.2
(3) 		175
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 470
1 2 3 4 5 6 range
A 133.6
(-3)
P 		335.4
(-0.1)
P 		173.9
(-2.4)
P 		305.3
(-0.6)
P 		458.4
(1.6)
P 		556.5
(3)
P 		423
B 248.5
(-1.8)
P 		291.4
(-1.2)
P 		159.9
(-3)
P 		326.4
(-0.7)
P 		530.6
(2)
P 		603.8
(3)
P 		444
C 299.8
(-1.7)
P 		262.9
(-2.3)
P 		281.2
(-2)
P 		224.6
(-3)
P 		465.6
(1.3)
P 		560.9
(3)
P 		336
avr 227.3
(-2.6) 		296.6
(-1.5) 		205
(-3) 		285.4
(-1.7) 		484.9
(1.6) 		573.7
(3) 		369
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192423_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10306
Sequence Type Exemplar sequence
Representative Public ID ZK809.4 NCBI
Target Description ZK809.4 /REP_DB=WormBase Gene ID /WP=CE18465 /TR=Q23599 /GB=CAA92642.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=hydrophobic nucleolar protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069803(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069803 NCBI Caenorhabditis elegans Equilibrative Nucleoside Transporter family member (ent-1) (ent-1) mRNA, complete cds. 10/11 A 
SNAP00000011187 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11653672:11655434:-1 10/11 None
GENEFINDER00000011193 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11653672:11655434:-1 10/11 None
ZK809.4 ENSEMBL cdna:known chromosome:CEL140:IV:11653395:11655440:-1 gene:ZK809.4 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11653677-11655440(-) 100.0 100.0
Public Domain and Genome References
Gene Title hydrophobic nucleolar protein like
Gene Symbol ent-1
Ensembl ZK809.4
Entrez Gene 178097 Entrez gene
SwissProt Q23599 EMBL-EBI
WormBase CE31754 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1636766_AT Equilibrative nucleoside transporter 2 dm
DROSGENOME1:152416_AT Equilibrative nucleoside transporter 2 dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5337 nucleoside transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92642 Hypothetical protein ZK809.4 [Caenorhabditis elegans] ref|NP_502204.2| Equilibrative Nucleoside Transporter family member (ent-1) [Caenorhabditis elegans] gb|AAM46663.1| equilibrative nucleoside transporter 1 [Caenorhabditis elegans] 0.0
blast CAB01882 Hypothetical protein K09A9.3 [Caenorhabditis elegans] ref|NP_510571.1| Equilibrative Nucleoside Transporter family member (ent-2) [Caenorhabditis elegans] 0.0
blast CAE63332 Hypothetical protein CBG07732 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002259 EMBL-EBI Delayed-early response protein/equilibrative nucleoside transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502204.2 10 29-51,115-137,142-164,177-199,214-233,273-295,315-337,350-367,382-404,417-439
ZK809.4 10 29-51,115-137,142-164,177-199,214-233,273-295,315-337,350-367,382-404,417-439
SNAP00000011187 10 29-51,115-137,142-164,177-199,214-233,273-295,315-337,350-367,382-404,417-439
GENEFINDER00000011193 10 29-51,115-137,142-164,177-199,214-233,273-295,315-337,350-367,382-404,417-439
Sequence
Target Sequence 
>C. ELEGANS:192423_S_AT
gtggctaattacatcgcaactttcaaggaggccttcccacaactcatcaacgtatttttg
gtcttcttcgttactctttccatcttcccaggagtcatgatgtatgttaaggatgagaag
aaaggaggtgtctacgatttcccattgccacgtcagtttttcatcaattctcttgaaata
cataaccgtgaattttcagaaaaatacttcatggatgtgaccacattccttcaattcaac
gtgttcgcttttattggatcaattgtcgccggaagaaagcaatggcctgcgccgaacaag
ctctggattccagtctacctccgtctcctctatattccattcttcatcttctgcaactat
ctccctgagacccgttcacttcccgtctttttcgaatccacctggcttttcgtcattatc
gccgcctcgatgagctttggaagtggatatttctcgggactcgccatgatgtacacctcg
aagactgttgatccatcgaaggctcaggtcgctggaatgatggccggattcttcctcatc
tctggaattgtctctggtctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCTAATTACATCGCAACTTTCA 31 493 799 Antisense
CTTCCCACAACTCATCAACGTATTT 40 219 831 Antisense
TATTTTTGGTCTTCTTCGTTACTCT 408 661 851 Antisense
CTTTCCATCTTCCCAGGAGTCATGA 311 223 874 Antisense
GCCACGTCAGTTTTTCATCAATTCT 700 279 945 Antisense
ACCTGGCTTTTCGTCATTATCGCCG 354 87 1198 Antisense
CGCCGCCTCGATGAGCTTTGGAAGT 201 257 1218 Antisense
TTTCTCGGGACTCGCCATGATGTAC 469 671 1248 Antisense
ATCCATCGAAGGCTCAGGTCGCTGG 340 39 1289 Antisense
GGAATGATGGCCGGATTCTTCCTCA 333 533 1312 Antisense
CATCTCTGGAATTGTCTCTGGTCTG 306 213 1335 Antisense
Sequence Source Affymetrix Proprietary Database