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[192420_at] ras GTPase-activating protein like

Description F09C3.1 /REP_DB=WormBase Gene ID /WP=CE23636 /TR=O17772 /GB=CAB07179.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ras GTPase-activating protein like
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 03      4grp_highest_8_8 > 61      4grp_high_8_8 > 18      6grp_highest_nonorm > 60      6grp_total > 24      4grp_total > 30      6grp_highest_sub > De      6grp_cgc > 21      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 528
1 2 3 4 range
A 643.6
(3)
P 		471.2
(-1.1)
P 		390.2
(-3)
P 		564
(1.1)
P 		253
B 917.8
(3)
P 		553.9
(-1.6)
P 		444.7
(-3)
P 		553.6
(-1.6)
P 		473
C 690.9
(1)
P 		540.8
(-1.2)
P 		414.3
(-3)
P 		827.7
(3)
P 		413
avr 750.8
(3) 		522
(-1.1) 		416.4
(-3) 		648.4
(1.2) 		334

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 467
1 2 3 4 5 6 range
A 727
(3)
P 		576.7
(1)
P 		458.8
(-0.5)
P 		371.9
(-1.7)
P 		340.8
(-2.1)
P 		271.9
(-3)
P 		455
B 610.1
(3)
P 		510.2
(1.3)
P 		444
(0.2)
P 		313.2
(-2.1)
P 		259.9
(-3)
P 		300.2
(-2.3)
P 		350
C 637
(3)
P 		432
(-0.6)
P 		478.5
(0.2)
P 		296.9
(-2.9)
P 		294
(-3)
P 		293.4
(-3)
P 		344
avr 658
(3) 		506.3
(0.5) 		460.4
(-0.2) 		327.3
(-2.4) 		298.2
(-2.8) 		288.5
(-3) 		370
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 234.3
(3)
P 		102.3
(-2.2)
P 		102
(-2.2)
P 		82.6
(-3)
P 		152
B 292.7
(3)
P 		136.8
(-1.9)
P 		103
(-3)
P 		118
(-2.5)
P 		190
C 228.7
(3)
P 		155.5
(-1.9)
P 		144.4
(-2.7)
P 		139.6
(-3)
P 		89
avr 251.9
(3) 		131.5
(-2.2) 		116.5
(-2.9) 		113.4
(-3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 134
(-0.1)
P 		205.1
(3)
P 		99.9
(-1.5)
P 		94.3
(-1.8)
P 		102.8
(-1.4)
P 		66.2
(-3)
P 		139
B 212.3
(3)
P 		169.8
(1)
P 		107.8
(-1.8)
P 		83
(-3)
P 		105.6
(-2)
P 		111.9
(-1.7)
P 		129
C 236.1
(3)
P 		131.8
(-0.5)
P 		121.8
(-0.9)
P 		59.7
(-3)
P 		95.1
(-1.8)
P 		98.2
(-1.7)
P 		176
avr 194.1
(3) 		168.9
(1.7) 		109.8
(-1.4) 		79
(-3) 		101.2
(-1.8) 		92.1
(-2.3) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1307
Sequence Type Exemplar sequence
Representative Public ID F09C3.1 NCBI
Target Description F09C3.1 /REP_DB=WormBase Gene ID /WP=CE23636 /TR=O17772 /GB=CAB07179.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ras GTPase-activating protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061091(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061091 NCBI Caenorhabditis elegans Patterned Expression Site family member (pes-7) (pes-7) mRNA, complete cds. 11/11 None
GENEFINDER00000039673 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14271432:14279845:1 11/11 None
SNAP00000039654 ENSEMBL cdna:SNAP chromosome:CEL140:I:14276036:14279351:1 10/11 None
F09C3.1 ENSEMBL cdna:known chromosome:CEL140:I:14271419:14279430:1 gene:F09C3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14271362-14279282(+) 100.0 100.0
Public Domain and Genome References
Gene Title ras GTPase-activating protein like
Gene Symbol pes-7
Ensembl F09C3.1
Entrez Gene 173294 Entrez gene
SwissProt O17772 EMBL-EBI
WormBase CE23636 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5099 Ras GTPase activator activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07179 Hypothetical protein F09C3.1 [Caenorhabditis elegans] ref|NP_493492.1| Patterned Expression Site family member (pes-7) [Caenorhabditis elegans] 0.0
blast CAE71780 Hypothetical protein CBG18782 [Caenorhabditis briggsae] 0.0
blast XP_523157 PREDICTED: similar to KIAA0051 [Pan troglodytes] 2.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 1.4E-11
Pfam IPR000593 EMBL-EBI RasGAP protein, C-terminal 8.2E-63
Pfam IPR000593 EMBL-EBI RasGAP protein, C-terminal 2.7E-36
Pfam IPR000593 EMBL-EBI RasGAP protein, C-terminal 9.1E-19
Pfam IPR000593 EMBL-EBI RasGAP protein, C-terminal 2.7E-36
Pfam IPR000593 EMBL-EBI RasGAP protein, C-terminal 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:192420_AT
actggaggccgatggccggactcaaaaatccgataactaccagtcaatagtgacagatat
cgcaaatgacattaggcttcacgagagacggcaaagagaacgtcaggagcagaagaagag
catcgcggcgacaaagcggaagctgatggagcagagagaagagcttcatgagaagttggc
aagatacgaggaatacctggagacttgtctgcagaacttgtcgaggacatcaagacgcct
ctcattccgcccgaacaccaaggaagccggcaaaatccaaaaggagcgtgcctcactgga
ccagatcaaaagctacaagagcaccgctgagaagctcttcaaaaagggagttatcagaga
aatcacaggatatcagacaccgaaaagaatctccaagcttaatgtggaatttgggtcgac
cgatatgatgggtgtgttctctgtggctttgacggaagggaagaatcaagttggaagtgc
cacgttgcagtttcaggatcttctcaaagcggactctgttgacgagaatacctatgtttt
ggcggagctcatcacactggacgtaccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGGAGGCCGATGGCCGGACTCAA 597 91 3579 Antisense
GAGGAATACCTGGAGACTTGTCTGC 487 405 3766 Antisense
GAGGACATCAAGACGCCTCTCATTC 313 405 3801 Antisense
CGCCCGAACACCAAGGAAGCCGGCA 60 257 3826 Antisense
CCAAAAGGAGCGTGCCTCACTGGAC 561 275 3855 Antisense
GAGCACCGCTGAGAAGCTCTTCAAA 28 391 3897 Antisense
TGTGTTCTCTGTGGCTTTGACGGAA 658 555 4011 Antisense
GGAAGTGCCACGTTGCAGTTTCAGG 553 531 4051 Antisense
AGGATCTTCTCAAAGCGGACTCTGT 370 57 4073 Antisense
GAATACCTATGTTTTGGCGGAGCTC 247 327 4104 Antisense
AGCTCATCACACTGGACGTACCAAA 255 79 4124 Antisense
Sequence Source Affymetrix Proprietary Database