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[192413_at] Zinc finger, C4 type (two domains)

Description C47F8.2 /REP_DB=WormBase Gene ID /WP=CE17571 /TR=O62112 /GB=CAA15836.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_total > 35      4grp_total > 26      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 6.8
(-3)
A 		7.2
(-2.9)
A 		6.4
(-3)
A 		72
(3)
A 		66
B 12.1
(-3)
A 		93
(3)
M 		25.5
(-2)
A 		13
(-2.9)
A 		81
C 30.3
(-2.7)
A 		70.2
(0.2)
A 		25.6
(-3)
A 		109.4
(3)
A 		84
avr 16.4
(-3) 		56.8
(2) 		19.2
(-2.7) 		64.8
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 41.7
(2.4)
A 		19.7
(-0.8)
A 		33.7
(1.3)
A 		4.2
(-3)
A 		20.6
(-0.6)
A 		45.6
(3)
A 		41
B 15.1
(1.1)
A 		20.3
(3)
A 		17.5
(2)
A 		6
(-2.3)
A 		4
(-3)
A 		4.8
(-2.7)
A 		16
C 16.6
(-0.1)
A 		32.2
(3)
A 		8.3
(-1.8)
A 		12.3
(-1)
A 		16.5
(-0.1)
A 		2.2
(-3)
A 		30
avr 24.5
(3) 		24.1
(2.9) 		19.8
(1.3) 		7.5
(-3) 		13.7
(-0.8) 		17.5
(0.5) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 2.5
(-2.4)
A 		1.6
(-3)
A 		1.7
(-2.9)
A 		10.5
(3)
A 		9
B 3.9
(-2.7)
A 		23
(3)
M 		5.9
(-2.1)
A 		2.8
(-3)
A 		20
C 10
(-2.4)
A 		20.2
(3)
A 		8.9
(-3)
A 		18.4
(2)
A 		11
avr 5.5
(-3) 		14.9
(3) 		5.5
(-3) 		10.6
(0.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 7.7
(1)
A 		7
(0.5)
A 		7.3
(0.7)
A 		1.1
(-3)
A 		6.2
(0.1)
A 		11.1
(3)
A 		10
B 5.3
(1.3)
A 		6.8
(3)
A 		4.3
(0.1)
A 		1.6
(-3)
A 		1.6
(-3)
A 		1.8
(-2.8)
A 		5
C 6.2
(0.6)
A 		9.8
(3)
A 		2.1
(-2.1)
A 		2.5
(-1.8)
A 		5.3
(0)
A 		0.7
(-3)
A 		9
avr 6.4
(1.5) 		7.9
(3) 		4.6
(-0.2) 		1.7
(-3) 		4.4
(-0.4) 		4.5
(-0.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192413_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1068
Sequence Type Exemplar sequence
Representative Public ID C47F8.2 NCBI
Target Description C47F8.2 /REP_DB=WormBase Gene ID /WP=CE17571 /TR=O62112 /GB=CAA15836.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060718(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060718 NCBI Caenorhabditis elegans C47F8.2 (C47F8.2) mRNA, complete cds. 10/11 None
GENEFINDER00000020218 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12337950:12344661:1 9/11 None
SNAP00000020214 ENSEMBL cdna:SNAP chromosome:CEL140:I:12339207:12341535:1 10/11 None
C47F8.2 ENSEMBL cdna:known chromosome:CEL140:I:12339207:12341535:1 gene:C47F8.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12339137-12341466(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C4 type (two domains)
Gene Symbol nhr-165
Ensembl C47F8.2
Entrez Gene 183558 Entrez gene
SwissProt O62112 EMBL-EBI
WormBase CE36112 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA15836 Hypothetical protein C47F8.2 [Caenorhabditis elegans] ref|NP_493119.2| C47F8.2 [Caenorhabditis elegans] 0.0
blast CAA15836 Hypothetical protein C47F8.2 [Caenorhabditis elegans] ref|NP_493119.2| C47F8.2 [Caenorhabditis elegans] 1.0E-180
blast CAA15835 Hypothetical protein C47F8.1 [Caenorhabditis elegans] ref|NP_493120.1| C47F8.1 [Caenorhabditis elegans] 1.0E-132
blast CAB05622 Hypothetical protein T15D6.6 [Caenorhabditis elegans] ref|NP_493137.2| Nuclear Hormone Receptor family member (nhr-77) [Caenorhabditis elegans] 9.0E-75
blast CAB02829 Hypothetical protein C41G6.5 [Caenorhabditis elegans] ref|NP_506768.1| C41G6.5 [Caenorhabditis elegans] 4.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.3E-18
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.3E-18
Sequence
Target Sequence 
>C. ELEGANS:192413_AT
ctttgagcaaccttctagcagtcctcttatttcagaatattcttcaaataaaatcaataa
acgatctaatgatcacttgtgcatacgacaatggctctgcgatggagtcttgtgtccact
gccctggaaccggtaaattgagccaggaagatgtacggctcttgcagaaatcctttcaat
ttgcacatacttggctggattctacgtggcagtactcaatagcaactgacattgatgaga
gtgaagtttctggagaaagcgaaaatctcagtcaattcatatcccatatcaagtcaactc
ttggagcttgcctagcaaatttgaagctggatgtctacgagtttgcagcctttaagtcat
tttgcgtctggagcattggagctcagggggcaacggaatcaatgaaagttgttgctcaag
agcactatgaagcagtagcttctgcgttgaaaatgtattacaagaccttcacctcaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTGAGCAACCTTCTAGCAGTCCT 454 223 572 Antisense
GGCTCTGCGATGGAGTCTTGTGTCC 625 539 664 Antisense
CCACTGCCCTGGAACCGGTAAATTG 24 269 687 Antisense
GTACGGCTCTTGCAGAAATCCTTTC 116 459 724 Antisense
TGCACATACTTGGCTGGATTCTACG 79 577 753 Antisense
ATCTCAGTCAATTCATATCCCATAT 141 33 836 Antisense
GTCAACTCTTGGAGCTTGCCTAGCA 682 463 864 Antisense
TGGATGTCTACGAGTTTGCAGCCTT 164 551 899 Antisense
AGCCTTTAAGTCATTTTGCGTCTGG 95 85 918 Antisense
TGGAGCTCAGGGGGCAACGGAATCA 12 549 948 Antisense
GTATTACAAGACCTTCACCTCAATG 198 453 1026 Antisense
Sequence Source Affymetrix Proprietary Database