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[192411_at] Human mRNA (KIAA0077) product like

Description T28B8.3 /REP_DB=WormBase Gene ID /WP=CE14331 /TR=P91834 /GB=CAB03442.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Human mRNA (KIAA0077) product like
Cluster 6grp_total > 14      4grp_total > 35      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 16.5
(-3)
A 		49.4
(2.4)
A 		41.7
(1.1)
A 		53.3
(3)
A 		37
B 21.3
(-1.7)
A 		76.6
(3)
A 		6.5
(-3)
A 		22.4
(-1.6)
A 		70
C 30.6
(0.2)
A 		11.1
(-2.2)
A 		4.7
(-3)
A 		53.7
(3)
A 		49
avr 22.8
(-1.9) 		45.7
(3) 		17.6
(-3) 		43.1
(2.4) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 49.2
(3)
A 		31
(0.6)
A 		13.6
(-1.7)
A 		21.5
(-0.7)
A 		3.7
(-3)
A 		26.5
(0)
A 		46
B 34.3
(3)
A 		16.2
(-0.5)
A 		8.9
(-1.9)
A 		28.5
(1.9)
A 		6
(-2.5)
A 		3.5
(-3)
A 		31
C 21.6
(-1.1)
A 		61.1
(3)
A 		24.8
(-0.7)
A 		17.6
(-1.5)
A 		6.1
(-2.6)
A 		2.6
(-3)
A 		59
avr 35
(2.8) 		36.1
(3) 		15.8
(-1) 		22.5
(0.4) 		5.3
(-3) 		10.9
(-1.9) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 6
(-3)
A 		10.7
(2.8)
A 		10.9
(3)
A 		7.8
(-0.8)
A 		5
B 6.8
(-1.2)
A 		18.9
(3)
A 		1.5
(-3)
A 		4.8
(-1.9)
A 		17
C 10.1
(3)
A 		3.2
(-1.9)
A 		1.6
(-3)
A 		9.1
(2.3)
A 		9
avr 7.6
(-0.2) 		10.9
(3) 		4.7
(-3) 		7.2
(-0.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 9.1
(1.8)
A 		11
(3)
A 		3
(-1.8)
A 		5.5
(-0.3)
A 		1.1
(-3)
A 		6.5
(0.3)
A 		10
B 11.9
(3)
A 		5.4
(-0.7)
A 		2.2
(-2.5)
A 		7.6
(0.6)
A 		2.4
(-2.4)
A 		1.3
(-3)
A 		11
C 8
(-0.6)
A 		18.7
(3)
A 		6.3
(-1.2)
A 		3.5
(-2.1)
A 		2
(-2.6)
A 		0.9
(-3)
A 		18
avr 9.7
(1.8) 		11.7
(3) 		3.8
(-1.8) 		5.5
(-0.8) 		1.8
(-3) 		2.9
(-2.3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192411_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1008
Sequence Type Exemplar sequence
Representative Public ID T28B8.3 NCBI
Target Description T28B8.3 /REP_DB=WormBase Gene ID /WP=CE14331 /TR=P91834 /GB=CAB03442.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Human mRNA (KIAA0077) product like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059831(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059831 NCBI Caenorhabditis elegans T28B8.3 (T28B8.3) mRNA, complete cds. 11/11 None
GENEFINDER00000004702 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8159685:8167858:1 11/11 None
SNAP00000004695 ENSEMBL cdna:SNAP chromosome:CEL140:I:8159988:8167858:1 11/11 None
T28B8.3 ENSEMBL cdna:known chromosome:CEL140:I:8158492:8167858:1 gene:T28B8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8158422-8167789(+) 100.0 100.0
Public Domain and Genome References
Gene Title Human mRNA (KIAA0077) product like
Ensembl T28B8.3
Entrez Gene 189032 Entrez gene
SwissProt P91834 EMBL-EBI
WormBase CE38229 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03442 Hypothetical protein T28B8.3 [Caenorhabditis elegans] ref|NP_492232.2| T28B8.3 [Caenorhabditis elegans] 0.0
blast T23130 hypothetical protein T28B8.4 - Caenorhabditis elegans 0.0
blast CAE60283 Hypothetical protein CBG03866 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
T28B8.3 1 101-123
Sequence
Target Sequence 
>C. ELEGANS:192411_AT
gacatttcactcgaattcgtggcatgttagactggctgtcatcaagtttgttcaagcagc
tgtctactcgaatattttcccgatgagccaacaatcaagacgagatgatattgaaaaact
tctgttccgtgcagtttatgatcgcgagatctcggttcgaaaggaggctgcgaaatgtct
tctactatttattcattgctcatatattcaattttcggatcaaaaaattgataaactcgc
gaatattcttcaatcagaaacggaactagaagcacgtgctcatggtgcatcattagctct
tggagcatttgtactggccttcccatttttcctgccaactaacatcataaagccattgag
tcttctgagctcgtcgagttcaaatcaagcagttgtgaaaaaaacgatgacggaaacagt
gcgagagttccgccgtcaacaccgtgatgattgggaggaaacaaaaaaaatattgggaga
cgcactgacgtttgacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATTTCACTCGAATTCGTGGCAT 181 371 5718 Antisense
TTCGTGGCATGTTAGACTGGCTGTC 335 693 5733 Antisense
GACTGGCTGTCATCAAGTTTGTTCA 95 377 5747 Antisense
GTTTGTTCAAGCAGCTGTCTACTCG 94 451 5763 Antisense
GTCTACTCGAATATTTTCCCGATGA 208 469 5779 Antisense
GTTCCGTGCAGTTTATGATCGCGAG 538 441 5841 Antisense
TAGAAGCACGTGCTCATGGTGCATC 468 651 5984 Antisense
CCATTTTTCCTGCCAACTAACATCA 315 269 6040 Antisense
GCCATTGAGTCTTCTGAGCTCGTCG 478 281 6069 Antisense
GAAACAGTGCGAGAGTTCCGCCGTC 574 355 6130 Antisense
GGGAGACGCACTGACGTTTGACATT 592 495 6192 Antisense
Sequence Source Affymetrix Proprietary Database