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[192409_at]

Description B0457.1 /REP_DB=WormBase Gene ID /WP=CE02945 /TR=Q17505 /GB=CAA91091.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=G-protein coupled receptor protein
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 52      4grp_high_8_8 > 25      6grp_highest_nonorm > 82      6grp_total > 48      4grp_total > 38      6grp_highest_sub > Cu      6grp_cgc > 19      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 356
1 2 3 4 range
A 396.7
(3)
P 		231.4
(-2.2)
P 		205.8
(-3)
P 		340.4
(1.2)
P 		191
B 428.6
(3)
P 		201.5
(-1.7)
P 		139.7
(-3)
P 		278.6
(-0.1)
P 		289
C 496
(3)
P 		232.6
(-2)
P 		181
(-3)
P 		231.1
(-2)
P 		315
avr 440.4
(3) 		221.8
(-2) 		175.5
(-3) 		283.4
(-0.6) 		265

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 322
1 2 3 4 5 6 range
A 394.5
(0.4)
P 		425.7
(1)
P 		211.4
(-3)
P 		273.3
(-1.8)
P 		402.5
(0.6)
P 		533.1
(3)
P 		322
B 364.9
(1.4)
P 		386.3
(2.1)
P 		230.5
(-3)
P 		288
(-1.1)
P 		336.4
(0.5)
P 		412.4
(3)
P 		182
C 390.3
(1.6)
P 		400.9
(2)
P 		295
(-2)
P 		269.6
(-3)
P 		299.8
(-1.8)
P 		426.2
(3)
P 		157
avr 383.2
(0.9) 		404.3
(1.5) 		245.6
(-3) 		277
(-2.1) 		346.2
(-0.1) 		457.2
(3) 		212
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 144.4
(3)
P 		50.2
(-3)
P 		53.8
(-2.7)
P 		49.8
(-3)
P 		95
B 136.7
(3)
P 		49.8
(-2)
P 		32.4
(-3)
P 		59.4
(-1.4)
P 		104
C 164.2
(3)
P 		66.9
(-1.7)
P 		63.1
(-1.8)
P 		39
(-3)
P 		125
avr 148.4
(3) 		55.6
(-2.6) 		49.8
(-3) 		49.4
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 72.7
(-1.5)
P 		151.4
(3)
P 		46
(-3)
P 		69.3
(-1.7)
P 		121.5
(1.3)
P 		129.8
(1.8)
P 		105
B 127
(1.4)
P 		128.6
(1.5)
P 		56
(-3)
P 		76.3
(-1.8)
P 		136.7
(2)
P 		153.8
(3)
P 		98
C 144.7
(3)
P 		122.3
(1.5)
P 		75.1
(-1.6)
P 		54.2
(-3)
P 		97
(-0.2)
P 		142.7
(2.9)
P 		91
avr 114.8
(1) 		134.1
(2.4) 		59
(-3) 		66.6
(-2.5) 		118.4
(1.3) 		142.1
(3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192409_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3349
Sequence Type Exemplar sequence
Representative Public ID B0457.1 NCBI
Target Description B0457.1 /REP_DB=WormBase Gene ID /WP=CE02945 /TR=Q17505 /GB=CAA91091.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=G-protein coupled receptor protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063493(11), NM_182149(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063493 NCBI Caenorhabditis elegans LATrophilin receptor family member (lat-1) (lat-1) mRNA, complete cds. 11/11 None
NM_182149 NCBI Caenorhabditis elegans LATrophilin receptor family member (lat-1) (lat-1) mRNA, complete cds. 11/11 None
SNAP00000022752 ENSEMBL cdna:SNAP chromosome:CEL140:II:8903125:8908009:1 11/11 None
GENEFINDER00000022763 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8896790:8908009:1 11/11 None
B0457.1b ENSEMBL cdna:known chromosome:CEL140:II:8896752:8908531:1 gene:B0457.1 11/11 A 
B0457.1a ENSEMBL cdna:known chromosome:CEL140:II:8896752:8908547:1 gene:B0457.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174419 3 2 NM_063493 174738_at (11), 192409_at (11)
NM_182149 174738_at (11), 192409_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8896786-8908006(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0457.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91091 Hypothetical protein B0457.1a [Caenorhabditis elegans] ref|NP_495894.1| LATrophilin receptor family member (lat-1) [Caenorhabditis elegans] gb|AAQ84877.1| latrophilin-like protein LAT-1A [Caenorhabditis elegans] 0.0
blast CAD59141 Hypothetical protein B0457.1b [Caenorhabditis elegans] ref|NP_871949.1| LATrophilin receptor family member (lat-1) [Caenorhabditis elegans] gb|AAQ84878.1| latrophilin-like protein LAT-1B [Caenorhabditis elegans] 0.0
blast CAE59757 Hypothetical protein CBG03206 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001879 EMBL-EBI Hormone receptor, extracellular 3.0E-15
Pfam IPR000203 EMBL-EBI GPS domain 1.1E-23
Pfam IPR000922 EMBL-EBI D-galactoside/L-rhamnose binding SUEL lectin domain 4.2E-44
Pfam IPR000832 EMBL-EBI G-protein coupled receptor family 2 (secretin-like) 4.7E-102
Pfam IPR001879 EMBL-EBI Hormone receptor, extracellular 3.0E-15
Pfam IPR000203 EMBL-EBI GPS domain 1.1E-23
Pfam IPR000922 EMBL-EBI D-galactoside/L-rhamnose binding SUEL lectin domain 1.7E-31
Pfam IPR000832 EMBL-EBI G-protein coupled receptor family 2 (secretin-like) 4.7E-102
Pfam IPR001879 EMBL-EBI Hormone receptor, extracellular 3.0E-15
Pfam IPR000203 EMBL-EBI GPS domain 1.1E-23
Pfam IPR000922 EMBL-EBI D-galactoside/L-rhamnose binding SUEL lectin domain 3.3E-6
Pfam IPR000922 EMBL-EBI D-galactoside/L-rhamnose binding SUEL lectin domain 2.5E-16
Pfam IPR000832 EMBL-EBI G-protein coupled receptor family 2 (secretin-like) 4.7E-102
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495894.1 7 554-576,583-605,615-634,654-676,691-713,742-764,774-796
NP_871949.1 7 552-574,581-603,613-632,652-674,689-711,740-762,772-794
B0457.1b 7 552-574,581-603,613-632,652-674,689-711,740-762,772-794
B0457.1a 7 554-576,583-605,615-634,654-676,691-713,742-764,774-796
SNAP00000022752 7 499-521,528-550,560-579,599-621,636-658,687-709,719-741
GENEFINDER00000022763 7 554-576,583-605,615-634,654-676,691-713,742-764,774-796
Sequence
Target Sequence 
>C. ELEGANS:192409_AT
agtgatttcctgtacaacacgaacgacaagtacctgaccaactcggatactacgaatcga
ttggtatataatggaataatgaatcatcctaatcaaatgtccgtatatcaacaacatcca
catcatcaaatttatgaacaacaaccgggaacgtatgattatgcaaccatcgcatatgga
gatatgatgcctggacatcgtgttgctgctccaccggcttatcaacgacttgccgttgcc
gaaggtcggtacggtagccaacatcaactctaccaaggatggcatcatcgtcctcctcca
gagttctcacccccaccacccccactgtcaactggaccaccgaactcgcgtcactatggg
actggctccagtggacgacggccgccgagctcaaagatgagtgatgactctgcatattcg
gatgggtcatcatcgatgttgacaactgaagtgacaccacaaggacagacggtgcttcga
attgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGATTTCCTGTACAACACGAACG 142 53 2536 Antisense
AACACGAACGACAAGTACCTGACCA 41 83 2551 Antisense
GTACCTGACCAACTCGGATACTACG 15 459 2565 Antisense
TGATGCCTGGACATCGTGTTGCTGC 22 565 2720 Antisense
TCCACCGGCTTATCAACGACTTGCC 372 587 2745 Antisense
CGACTTGCCGTTGCCGAAGGTCGGT 10 245 2761 Antisense
GAAGGTCGGTACGGTAGCCAACATC 622 333 2776 Antisense
ACCAAGGATGGCATCATCGTCCTCC 249 85 2807 Antisense
GTCACTATGGGACTGGCTCCAGTGG 157 465 2885 Antisense
GAGTGATGACTCTGCATATTCGGAT 398 401 2934 Antisense
GGACAGACGGTGCTTCGAATTGATT 79 527 2998 Antisense
Sequence Source Affymetrix Proprietary Database