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[192406_at] Zinc finger, C4 type (two domains)

Description C41G6.5 /REP_DB=WormBase Gene ID /WP=CE15702 /TR=O17657 /GB=CAB02829.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster 6grp_total > 55      4grp_total > 11      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 12.8
(-1.1)
A 		2.5
(-2.8)
A 		1.2
(-3)
A 		37.8
(3)
A 		37
B 11.9
(0.5)
A 		0.8
(-3)
A 		2.6
(-2.4)
A 		20.1
(3)
A 		19
C 5.5
(-2.4)
A 		20.7
(-0.5)
A 		0.8
(-3)
A 		48.9
(3)
A 		48
avr 10.1
(-1.5) 		8
(-1.9) 		1.5
(-3) 		35.6
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 13
(0.1)
A 		1
(-3)
A 		24
(3)
A 		2.6
(-2.6)
A 		2
(-2.7)
A 		17.3
(1.3)
A 		23
B 1.1
(-3)
A 		2.3
(-2.3)
A 		1.4
(-2.8)
A 		3.9
(-1.4)
A 		2.7
(-2.1)
A 		11.3
(3)
A 		10
C 3
(-1.5)
A 		8.8
(3)
A 		1.4
(-2.7)
A 		2.5
(-1.8)
A 		1
(-3)
A 		2.5
(-1.8)
A 		8
avr 5.7
(-0.3) 		4
(-1.5) 		8.9
(1.9) 		3
(-2.2) 		1.9
(-3) 		10.4
(3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 4.7
(2.1)
A 		0.5
(-2.8)
A 		0.3
(-3)
A 		5.5
(3)
A 		5
B 3.8
(2.3)
A 		0.2
(-3)
A 		0.6
(-2.4)
A 		4.3
(3)
A 		4
C 1.8
(-1.9)
A 		6
(1.3)
A 		0.3
(-3)
A 		8.2
(3)
A 		8
avr 3.4
(0.2) 		2.2
(-1.1) 		0.4
(-3) 		6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.4
(-0.5)
A 		0.4
(-3)
A 		5.2
(3)
A 		0.7
(-2.6)
A 		0.6
(-2.8)
A 		4.2
(1.8)
A 		5
B 0.4
(-2.8)
A 		0.8
(-2.2)
A 		0.3
(-3)
A 		1
(-1.9)
A 		1.1
(-1.8)
A 		4.2
(3)
A 		4
C 1.1
(-1)
A 		2.7
(3)
A 		0.4
(-2.8)
A 		0.5
(-2.5)
A 		0.3
(-3)
A 		0.8
(-1.8)
A 		2
avr 1.3
(-1.5) 		1.3
(-1.5) 		2
(0.3) 		0.7
(-3) 		0.7
(-3) 		3.1
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192406_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13737
Sequence Type Exemplar sequence
Representative Public ID C41G6.5 NCBI
Target Description C41G6.5 /REP_DB=WormBase Gene ID /WP=CE15702 /TR=O17657 /GB=CAB02829.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C4 type (two domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074367 NCBI Caenorhabditis elegans C41G6.5 (C41G6.5) mRNA, complete cds. 11/11 None
SNAP00000010442 ENSEMBL cdna:SNAP chromosome:CEL140:V:15236480:15238347:-1 11/11 None
GENEFINDER00000010449 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15236480:15238311:-1 11/11 None
C41G6.5 ENSEMBL cdna:known chromosome:CEL140:V:15236480:15238347:-1 gene:C41G6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15236479-15238347(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C4 type (two domains)
Gene Symbol nhr-164
Ensembl C41G6.5
Entrez Gene 183381 Entrez gene
SwissProt O17657 EMBL-EBI
WormBase CE15702 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02829 Hypothetical protein C41G6.5 [Caenorhabditis elegans] ref|NP_506768.1| C41G6.5 [Caenorhabditis elegans] 0.0
blast CAB02829 Hypothetical protein C41G6.5 [Caenorhabditis elegans] ref|NP_506768.1| C41G6.5 [Caenorhabditis elegans] 1.0E-165
blast CAB05462 Hypothetical protein C54C8.1 [Caenorhabditis elegans] ref|NP_493156.2| C54C8.1 [Caenorhabditis elegans] 1.0E-103
blast CAB05622 Hypothetical protein T15D6.6 [Caenorhabditis elegans] ref|NP_493137.2| Nuclear Hormone Receptor family member (nhr-77) [Caenorhabditis elegans] 1.0E-102
blast CAB05462 Hypothetical protein C54C8.1 [Caenorhabditis elegans] ref|NP_493156.2| C54C8.1 [Caenorhabditis elegans] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.3E-12
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.3E-12
Sequence
Target Sequence 
>C. ELEGANS:192406_AT
catgttcatcgtttccgggagtcgaattaattgatgagaataatattctgattcttcgta
aatatctccaattttcaagtgtttggatcgaatccacatggacatattggatcacaaatt
cttcagtttcagttgataatatggagatggataaaaggctaaaagaactcattgagcacg
tcaaatcaacactactaatttcgctgtctcaattaaaactcaatattttcgaattcgcag
cattcaaatcatttttcgtctggaaattagtgttccacaaaacaagcgttgccatgaaaa
ctatcgggcaggagcattatgaatgtgtcagcagtgccttaaaaagttattatcagacat
acacttcaatggattcaactgaaattgctgttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGTTCATCGTTTCCGGGAGTCGA 562 209 650 Antisense
CTGATTCTTCGTAAATATCTCCAAT 207 239 697 Antisense
GGATCACAAATTCTTCAGTTTCAGT 482 511 758 Antisense
AGAACTCATTGAGCACGTCAAATCA 613 73 813 Antisense
AACACTACTAATTTCGCTGTCTCAA 29 137 837 Antisense
AACTCAATATTTTCGAATTCGCAGC 214 141 866 Antisense
GTTCCACAAAACAAGCGTTGCCATG 331 441 921 Antisense
GAAAACTATCGGGCAGGAGCATTAT 203 355 945 Antisense
TATGAATGTGTCAGCAGTGCCTTAA 24 657 967 Antisense
GACATACACTTCAATGGATTCAACT 66 369 1005 Antisense
GGATTCAACTGAAATTGCTGTTCGA 436 509 1020 Antisense
Sequence Source Affymetrix Proprietary Database