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[192404_at] testis-specific protein TPX-1 like

Description C39E9.2 /REP_DB=WormBase Gene ID /WP=CE05385 /TR=Q18543 /GB=CAA94335.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster 6grp_high1_10_10 > 09      4grp_highest_8_8 > 59      4grp_high_8_8 > 33      6grp_total > 19      4grp_total > 38      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1106
1 2 3 4 range
A 1257.4
(3)
P 		655.8
(-0.6)
P 		254.6
(-3)
P 		460.2
(-1.8)
P 		1003
B 1264.6
(3)
P 		439.8
(-2.2)
P 		309.4
(-3)
P 		487.9
(-1.9)
P 		955
C 1324.8
(3)
P 		472.3
(-1.6)
P 		218.8
(-3)
P 		434.8
(-1.8)
P 		1106
avr 1282.3
(3) 		522.6
(-1.5) 		260.9
(-3) 		461
(-1.8) 		1021

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 246.9
(3)
P 		172.3
(0.2)
P 		110.6
(-2.2)
P 		202.7
(1.3)
P 		224.1
(2.1)
P 		88.5
(-3)
A 		158
B 279.9
(3)
P 		117.2
(-1.4)
P 		181.2
(0.3)
P 		235.6
(1.8)
P 		260.1
(2.5)
P 		58.9
(-3)
A 		221
C 330.7
(3)
P 		184
(-0.8)
P 		193
(-0.5)
P 		207.5
(-0.2)
P 		317.5
(2.7)
P 		96.7
(-3)
P 		234
avr 285.8
(3) 		157.8
(-0.8) 		161.6
(-0.6) 		215.3
(0.9) 		267.2
(2.5) 		81.4
(-3) 		204
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 391
1 2 3 4 range
A 457.8
(3)
P 		142.4
(-1.8)
P 		66.6
(-3)
P 		67.4
(-3)
P 		391
B 403.3
(3)
P 		108.6
(-2.3)
P 		71.7
(-3)
P 		104
(-2.4)
P 		332
C 438.5
(3)
P 		135.8
(-2)
P 		76.3
(-3)
P 		73.3
(-3)
P 		365
avr 433.2
(3) 		128.9
(-2) 		71.5
(-3) 		81.6
(-2.8) 		362

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 45.5
(0.1)
P 		61.3
(2.2)
P 		24.1
(-2.7)
P 		51.4
(0.9)
P 		67.6
(3)
P 		21.6
(-3)
A 		46
B 97.4
(2.4)
P 		39
(-1.8)
P 		44
(-1.4)
P 		62.4
(-0.1)
P 		105.7
(3)
P 		22
(-3)
A 		84
C 122.6
(3)
P 		56.1
(-1.4)
P 		49.1
(-1.9)
P 		41.7
(-2.4)
P 		102.8
(1.7)
P 		32.4
(-3)
P 		90
avr 88.5
(2.7) 		52.1
(-0.6) 		39.1
(-1.8) 		51.8
(-0.6) 		92
(3) 		25.3
(-3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192404_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9217
Sequence Type Exemplar sequence
Representative Public ID C39E9.2 NCBI
Target Description C39E9.2 /REP_DB=WormBase Gene ID /WP=CE05385 /TR=Q18543 /GB=CAA94335.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070105(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070105 NCBI Caenorhabditis elegans C39E9.2 (C39E9.2) mRNA, complete cds. 11/11 None
SNAP00000026300 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13063990:13065078:1 11/11 None
GENEFINDER00000026326 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13063990:13065078:1 11/11 None
C39E9.2 ENSEMBL cdna:known chromosome:CEL140:IV:13063990:13065078:1 gene:C39E9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13063995-13065084(+) 100.0 100.0
Public Domain and Genome References
Gene Title testis-specific protein TPX-1 like
Ensembl C39E9.2
Entrez Gene 178253 Entrez gene
SwissProt Q18543 EMBL-EBI
WormBase CE05385 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17762_S_AT pathogenesis-related protein, putative at
ATH1-121501:266383_AT pathogenesis-related protein, putative at
CANINE_2:CFA.20732.1.S1_S_AT similar to protease inhibitor 16 precursor cfa
CANINE_2:CFAAFFX.3052.1.S1_AT similar to protease inhibitor 16 precursor cfa
HU35KSUBA:RC_AA610034_AT peptidase inhibitor 16 hs
HU35KSUBD:RC_R46781_F_AT peptidase inhibitor 16 hs
U133_X3P:HS.25391.0.A1_3P_AT peptidase inhibitor 16 hs
HG-U133_PLUS_2:228312_AT peptidase inhibitor 16 hs
HG-U133B:228312_AT peptidase inhibitor 16 hs
HG-U95C:64057_AT peptidase inhibitor 16 hs
MOUSE430A_2:1422026_AT peptidase inhibitor 16 mm
MOE430A:1422026_AT peptidase inhibitor 16 mm
MOUSE430_2:1422026_AT peptidase inhibitor 16 mm
MOUSE430A_2:1453839_A_AT peptidase inhibitor 16 mm
MOUSE430_2:1453839_A_AT peptidase inhibitor 16 mm
MOE430A:1453839_A_AT peptidase inhibitor 16 mm
MG-U74BV2:113665_AT peptidase inhibitor 16 mm
MOUSE430_2:1440744_AT Peptidase inhibitor 16, mRNA (cDNA clone IMAGE:3586291) mm
MOE430B:1440744_AT Peptidase inhibitor 16, mRNA (cDNA clone IMAGE:3586291) mm
MU19KSUBB:TC34338_AT Peptidase inhibitor 16, mRNA (cDNA clone IMAGE:3586291) mm
RG-U34B:RC_AI044661_AT protease inhibitor 16 (predicted) rn
RAE230B:1380484_AT protease inhibitor 16 (predicted) rn
RAT230_2:1380484_AT protease inhibitor 16 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94335 Hypothetical protein C39E9.2 [Caenorhabditis elegans] ref|NP_502506.1| C39E9.2 [Caenorhabditis elegans] 1.0E-121
blast CAA98060 Hypothetical protein F09E8.5 [Caenorhabditis elegans] ref|NP_502532.1| F09E8.5 [Caenorhabditis elegans] 1.0E-104
blast CAE58674 Hypothetical protein CBG01847 [Caenorhabditis briggsae] 1.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 1.1E-64
Sequence
Target Sequence 
>C. ELEGANS:192404_AT
tcaattctccgccaacggacaagcagccatcctcaatgtccataatactcttcgatcaag
aattgctaaaggaacctatgtggccaagggaaccgcaaagcctgctgcaagtgacatgct
caagatgaaatgggacgccactgtcgccgcttcagcccaagcttatgctaacaagtgccc
aaccggtcactctggagccgcaggactcggagagaacctctactggtactggacttctgc
aaccatcaccaacattgatcaattcggagccaccggatctgctgcctgggagaaggagtt
ccaggactacggatggagctcaaacacactttccatgtcattgttcaacacaggaatcgg
acacgctactcaaatggcttgggcaaagacgaatttgattggatgtggtgtgaagaactg
tggaaaggataccaatggattcaataaggtcaccgttgtctgtcagtacaagccacaagg
aaactacttgaaccaaaacatctacacatctggaaccacctgctcaaaatgcccaagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATTCTCCGCCAACGGACAAGCA 580 633 63 Antisense
CAGCCATCCTCAATGTCCATAATAC 488 203 86 Antisense
CCAAGGGAACCGCAAAGCCTGCTGC 289 267 146 Antisense
AGCCTGCTGCAAGTGACATGCTCAA 688 81 161 Antisense
GATGAAATGGGACGCCACTGTCGCC 641 411 186 Antisense
CGCTTCAGCCCAAGCTTATGCTAAC 12 255 210 Antisense
GCCGCAGGACTCGGAGAGAACCTCT 193 285 259 Antisense
TCAATTCGGAGCCACCGGATCTGCT 358 633 321 Antisense
GGAGCTCAAACACACTTTCCATGTC 291 521 377 Antisense
ATAAGGTCACCGTTGTCTGTCAGTA 23 25 506 Antisense
ACCACCTGCTCAAAATGCCCAAGTG 645 85 577 Antisense
Sequence Source Affymetrix Proprietary Database