[Home] | [Total List]

[192397_at] testis-specific protein TPX-1 like

Description C39E9.5 /REP_DB=WormBase Gene ID /WP=CE05388 /TR=Q18539 /GB=CAA94331.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster 6grp_total > 94      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 7.2
(-2.7)
A 		7
(-3)
A 		7.8
(-1.8)
A 		11
(3)
A 		4
B 16.5
(1.8)
A 		18.1
(2.9)
A 		18.3
(3)
A 		9.3
(-3)
A 		9
C 7.9
(-3)
A 		19.9
(1.8)
A 		11.4
(-1.6)
A 		22.8
(3)
A 		15
avr 10.5
(-3) 		15
(3) 		12.5
(-0.3) 		14.4
(2.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 15.8
(1.2)
A 		9.6
(-3)
A 		11.4
(-1.8)
A 		12.8
(-0.8)
A 		18.4
(3)
A 		15.2
(0.8)
A 		9
B 6.2
(-3)
A 		8.6
(-1.7)
A 		11.2
(-0.4)
A 		12.2
(0.2)
A 		17.6
(3)
A 		7.1
(-2.5)
A 		11
C 9.8
(-0.8)
A 		9.5
(-1.1)
A 		9.5
(-1.1)
A 		7.5
(-3)
A 		8.9
(-1.6)
A 		13.7
(3)
A 		6
avr 10.6
(-1.6) 		9.2
(-3) 		10.7
(-1.4) 		10.8
(-1.3) 		15
(3) 		12
(-0.1) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.6
(3)
A 		1.5
(-3)
A 		2
(-0.3)
A 		1.6
(-2.5)
A 		1
B 5.3
(3)
A 		4.5
(1.5)
A 		4.2
(1)
A 		2
(-3)
A 		3
C 2.6
(-3)
A 		5.7
(3)
A 		4
(-0.3)
A 		3.8
(-0.7)
A 		3
avr 3.5
(1.3) 		3.9
(3) 		3.4
(0.9) 		2.5
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.9
(-2.2)
A 		3.4
(-1.2)
A 		2.5
(-3)
A 		3.2
(-1.6)
A 		5.5
(3)
A 		3.7
(-0.6)
A 		3
B 2.2
(-3)
A 		2.9
(-2.1)
A 		2.7
(-2.4)
A 		3.2
(-1.8)
A 		7.1
(3)
A 		2.7
(-2.4)
A 		5
C 3.6
(1.1)
A 		2.9
(-0.3)
A 		2.4
(-1.3)
A 		1.5
(-3)
A 		2.9
(-0.3)
A 		4.6
(3)
A 		3
avr 2.9
(-2.1) 		3.1
(-1.7) 		2.5
(-3) 		2.6
(-2.8) 		5.2
(3) 		3.7
(-0.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192397_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10207
Sequence Type Exemplar sequence
Representative Public ID C39E9.5 NCBI
Target Description C39E9.5 /REP_DB=WormBase Gene ID /WP=CE05388 /TR=Q18539 /GB=CAA94331.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=testis-specific protein TPX-1 like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070108(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070108 NCBI Caenorhabditis elegans C39E9.5 (C39E9.5) mRNA, complete cds. 11/11 A 
SNAP00000026304 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13070449:13071191:1 11/11 None
GENEFINDER00000026322 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13070449:13071191:1 11/11 None
C39E9.5 ENSEMBL cdna:known chromosome:CEL140:IV:13070449:13071191:1 gene:C39E9.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13070454-13071197(+) 100.0 100.0
Public Domain and Genome References
Gene Title testis-specific protein TPX-1 like
Ensembl C39E9.5
Entrez Gene 183344 Entrez gene
SwissProt Q18539 EMBL-EBI
WormBase CE05388 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94331 Hypothetical protein C39E9.5 [Caenorhabditis elegans] ref|NP_502509.1| C39E9.5 [Caenorhabditis elegans] 1.0E-122
blast CAA94332 Hypothetical protein C39E9.6 [Caenorhabditis elegans] ref|NP_502510.1| C39E9.6 [Caenorhabditis elegans] 8.0E-85
blast CAE58665 Hypothetical protein CBG01834 [Caenorhabditis briggsae] 2.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 1.2E-59
Sequence
Target Sequence 
>C. ELEGANS:192397_AT
tgcaaactgctctcgtgttggcacttgtctgcgttggagcccatgctcaattctcggaag
gaggcaaacagtccatggtaaatgctcacaacgctgtcagatcaagcattgcaaaaggag
agtatgttgcgaagggaaccaagaaggatagtgctaccaatatgttgaagatgaaatggg
acaactctctcgcacaatccgctcaaaactacgctaacggatgtccaatgcaacattccc
ccgataaatcttacggagaaaaccttttctgggcatatagctcgtcgccaatcactgacc
tcgataaatacgtacagagcgccgttgacacttgggtaagcgagttccaaatgttcggat
ggaactctaataaattcacaactgcactttggaacactggaatcggacatgctactcaag
tggcctggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAAACTGCTCTCGTGTTGGCACT 527 577 14 Antisense
GTTGGCACTTGTCTGCGTTGGAGCC 446 435 30 Antisense
AATGCTCACAACGCTGTCAGATCAA 58 167 94 Antisense
ATGAAATGGGACAACTCTCTCGCAC 190 45 184 Antisense
GCACAATCCGCTCAAAACTACGCTA 675 315 205 Antisense
ACGGATGTCCAATGCAACATTCCCC 689 95 230 Antisense
CAACATTCCCCCGATAAATCTTACG 315 189 244 Antisense
ACCTTTTCTGGGCATATAGCTCGTC 588 87 275 Antisense
TCGCCAATCACTGACCTCGATAAAT 253 599 298 Antisense
TACGTACAGAGCGCCGTTGACACTT 378 647 322 Antisense
GACATGCTACTCAAGTGGCCTGGAG 314 369 419 Antisense
Sequence Source Affymetrix Proprietary Database