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[192396_at] Zinc finger, C2H2 type (7 domains)

Description Y5F2A.4 /REP_DB=WormBase Gene ID /WP=CE19025 /TR=Q9XWL0 /GB=CAA21647.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (7 domains)
Cluster 6grp_high1_10_10 > 79      4grp_high_8_8 > 01      6grp_total > 69      4grp_total > 22      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 361.1
(2.4)
P 		211.1
(-3)
P 		249.1
(-1.6)
A 		378.9
(3)
P 		168
B 384.4
(3)
P 		313.5
(0.7)
A 		201.5
(-3)
A 		353.6
(2)
P 		183
C 360.5
(1.5)
P 		282
(-1.9)
A 		257.5
(-3)
P 		394.6
(3)
P 		137
avr 368.7
(2.7) 		268.9
(-1.6) 		236
(-3) 		375.7
(3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 332.2
(-1.9)
P 		344.8
(-1.6)
P 		313
(-2.3)
P 		282.4
(-3)
P 		366
(-1.1)
P 		545.1
(3)
P 		263
B 399.3
(-0.8)
P 		321.9
(-2.3)
P 		285.2
(-3)
P 		314
(-2.4)
P 		446.2
(0.1)
P 		594.9
(3)
P 		310
C 399.4
(1.4)
P 		312.7
(-1.9)
P 		282.8
(-3)
P 		406
(1.6)
A 		383.3
(0.8)
P 		442
(3)
P 		159
avr 377
(-0.9) 		326.5
(-2.2) 		293.7
(-3) 		334.1
(-2) 		398.5
(-0.3) 		527.3
(3) 		234
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 131.5
(3)
P 		45.8
(-3)
P 		65.1
(-1.6)
A 		55.5
(-2.3)
P 		86
B 122.6
(3)
P 		77.4
(-0.6)
A 		46.7
(-3)
A 		75.3
(-0.7)
P 		76
C 119.3
(3)
P 		81.1
(-1.3)
A 		89.8
(-0.4)
P 		66.5
(-3)
P 		53
avr 124.5
(3) 		68.1
(-2.8) 		67.2
(-2.9) 		65.8
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 61.2
(-3)
P 		122.6
(2.2)
P 		68.2
(-2.4)
P 		71.6
(-2.1)
P 		110.4
(1.1)
P 		132.7
(3)
P 		72
B 138.9
(-0.3)
P 		107.1
(-1.5)
P 		69.3
(-3)
P 		83.2
(-2.5)
P 		181.3
(1.4)
P 		221.8
(3)
P 		153
C 148
(3)
P 		95.4
(-1.2)
P 		72
(-3)
P 		81.6
(-2.2)
A 		124
(1.1)
P 		148
(3)
P 		76
avr 116
(-0.2) 		108.4
(-0.6) 		69.8
(-3) 		78.8
(-2.4) 		138.6
(1.2) 		167.5
(3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192396_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8741
Sequence Type Exemplar sequence
Representative Public ID Y5F2A.4 NCBI
Target Description Y5F2A.4 /REP_DB=WormBase Gene ID /WP=CE19025 /TR=Q9XWL0 /GB=CAA21647.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (7 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069662(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069662 NCBI Caenorhabditis elegans Y5F2A.4 (Y5F2A.4) mRNA, complete cds. 11/11 None
SNAP00000001506 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11070874:11078425:-1 9/11 None
GENEFINDER00000001513 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11076148:11078548:-1 11/11 None
Y5F2A.4 ENSEMBL cdna:known chromosome:CEL140:IV:11076068:11078554:-1 gene:Y5F2A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11076153-11078554(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (7 domains)
Ensembl Y5F2A.4
Entrez Gene 178004 Entrez gene
SwissProt Q9XWL0 EMBL-EBI
WormBase CE19025 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21647 Hypothetical protein Y5F2A.4 [Caenorhabditis elegans] ref|NP_502063.1| Y5F2A.4 [Caenorhabditis elegans] 0.0
blast CAE61992 Hypothetical protein CBG06000 [Caenorhabditis briggsae] 1.0E-116
blast CAE61992 Hypothetical protein CBG06000 [Caenorhabditis briggsae] 2.0E-87
blast XP_512875 PREDICTED: similar to KIAA2033 protein [Pan troglodytes] 6.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.5E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.2E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 8.5E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.2E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 8.5E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000001506 10 530-549,556-575,595-614,621-642,662-681,688-707,727-746,753-772,792-811,818-837
Sequence
Target Sequence 
>C. ELEGANS:192396_AT
gtggctacagtacattggcaccggctgaagcgtgcagtgtcgaaaagtgtcacaataaga
cacaaattgaaagatgcaccaatcgccgataaagatgttcccagcagttcaggccaatcc
tcattagaagaagaaattttagacgattcagaagatgatttggaagatactggggaagga
ctaagcaatcgggaacagttcaaaaatcgagatataaaacgagaaaataatctagaagaa
gtaaaatcatcaactgataatagagatgaagaagatagtttgtttaatttcccagacact
tctacatctcaattagacttctgctcaacagcattcacagaagatgatagttttcctgga
gattacgtaacattatcaatttgtcccaaaaatacggatttgtcgtttgatttacgagat
cgactcccacccgaactttctgaactatttcccgaacttgaagctacttcaatagttcta
ctaaacaaaagcataagatgcagaatgacagtccgtgtgcctgtatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCTACAGTACATTGGCACCGGC 622 491 775 Antisense
GGCACCGGCTGAAGCGTGCAGTGTC 481 535 791 Antisense
GAAAGATGCACCAATCGCCGATAAA 212 361 843 Antisense
TAAAGATGTTCCCAGCAGTTCAGGC 98 641 864 Antisense
AGTTCAGGCCAATCCTCATTAGAAG 459 61 880 Antisense
TTCCCAGACACTTCTACATCTCAAT 708 697 1063 Antisense
GACTTCTGCTCAACAGCATTCACAG 216 371 1090 Antisense
TTGATTTACGAGATCGACTCCCACC 368 705 1181 Antisense
CTTTCTGAACTATTTCCCGAACTTG 290 221 1210 Antisense
GAAGCTACTTCAATAGTTCTACTAA 53 343 1234 Antisense
GAATGACAGTCCGTGTGCCTGTATG 495 331 1277 Antisense
Sequence Source Affymetrix Proprietary Database