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[192395_at] Zinc finger, C2H2 type (5 domains)

Description F25D7.3 /REP_DB=WormBase Gene ID /WP=CE09631 /TR=Q93560 /GB=CAB01695.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (5 domains)
Cluster 4grp_high_8_8 > 63      6grp_total > 33      4grp_total > 57      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 78.2
(1.6)
P 		65.3
(0.1)
A 		91.1
(3)
P 		36.9
(-3)
A 		54
B 50.2
(-1.9)
P 		87.9
(3)
A 		41.5
(-3)
P 		59.1
(-0.7)
P 		46
C 45.4
(-3)
P 		50.4
(-2.3)
P 		88.6
(3)
P 		60.3
(-0.9)
A 		43
avr 57.9
(-1.4) 		67.9
(1.4) 		73.7
(3) 		52.1
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 50.8
(0.9)
A 		72.4
(3)
P 		42.1
(0)
A 		16.9
(-2.4)
A 		32.3
(-0.9)
A 		11
(-3)
A 		61
B 33.1
(-1.8)
A 		62.8
(3)
P 		53.8
(1.6)
M 		25.4
(-3)
A 		47.2
(0.5)
P 		28.2
(-2.6)
P 		37
C 79.1
(3)
P 		6.4
(-3)
A 		72.7
(2.5)
P 		54.2
(0.9)
A 		63.2
(1.7)
A 		49.5
(0.6)
A 		73
avr 54.3
(2.6) 		47.2
(1) 		56.2
(3) 		32.2
(-2.4) 		47.6
(1.1) 		29.6
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 28.5
(3)
P 		14.2
(-0.7)
A 		23.8
(1.8)
P 		5.4
(-3)
A 		23
B 16
(0.2)
P 		21.7
(3)
A 		9.6
(-3)
P 		12.6
(-1.5)
P 		12
C 15
(-1.6)
P 		14.5
(-1.8)
P 		30.9
(3)
P 		10.2
(-3)
A 		21
avr 19.8
(2.2) 		16.8
(0.7) 		21.4
(3) 		9.4
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 9.4
(-1.3)
A 		25.8
(3)
P 		9.2
(-1.3)
A 		4.3
(-2.6)
A 		9.7
(-1.2)
A 		2.7
(-3)
A 		23
B 11.5
(-1)
A 		20.9
(3)
P 		13.1
(-0.3)
M 		6.7
(-3)
A 		19.2
(2.3)
P 		10.5
(-1.4)
P 		14
C 29.3
(3)
P 		2
(-3)
A 		18.5
(0.6)
P 		10.9
(-1)
A 		20.5
(1.1)
A 		16.6
(0.2)
A 		27
avr 16.7
(3) 		16.2
(2.7) 		13.6
(1) 		7.3
(-3) 		16.5
(2.9) 		9.9
(-1.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192395_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1710
Sequence Type Exemplar sequence
Representative Public ID F25D7.3 NCBI
Target Description F25D7.3 /REP_DB=WormBase Gene ID /WP=CE09631 /TR=Q93560 /GB=CAB01695.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (5 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060322(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060322 NCBI Caenorhabditis elegans Blimp1 (B Lymphocyte-induced Maturation Protein-1) homolog family member (blmp-1) (blmp-1) mRNA, complete cds. 11/11 None
SNAP00000011699 ENSEMBL cdna:SNAP chromosome:CEL140:I:10417481:10421968:1 11/11 None
GENEFINDER00000011704 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10417481:10421968:1 11/11 None
F25D7.3 ENSEMBL cdna:known chromosome:CEL140:I:10417481:10422848:1 gene:F25D7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10417411-10421899(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (5 domains)
Gene Symbol blmp-1
Ensembl F25D7.3
Entrez Gene 172917 Entrez gene
SwissProt Q93560 EMBL-EBI
WormBase CE09631 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01695 Hypothetical protein F25D7.3 [Caenorhabditis elegans] ref|NP_492723.1| Blimp1 (B Lymphocyte-induced Maturation Protein-1) homolog family member (blmp-1) [Caenorhabditis elegans] 0.0
blast CAE58934 Hypothetical protein CBG02201 [Caenorhabditis briggsae] 0.0
blast XP_391847 PREDICTED: similar to CG5249-PA [Apis mellifera] 1.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.0E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.6E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.0E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.1E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.0E-4
Sequence
Target Sequence 
>C. ELEGANS:192395_AT
gaaggatcaatgtcagggtcgggttatggaaatctgggaatctttgaaaatacactgaac
tccgaactcaagcggccacttatgccaatcgaaaccatttatagtaaatacaatcttccc
aacgcctccctcctcggtcaaggtccaagtggaatgcaagaacaacaggctccaccacca
acatctcaacagcagcaacacatgatgtatggaaacacaatgggacatatgggacaagga
tcccatcttcaggggccaccaccacctccacaacatttccaaatggatcatagtggaatg
cagaatggaggaggtattccacatcaacatcaacttattcaaggaggtccatcatctgga
tctggtcaacagcaacatccacaacataatgggattcataggcttcctgatttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGATCAATGTCAGGGTCGGGTT 201 335 2008 Antisense
AATACACTGAACTCCGAACTCAAGC 245 171 2056 Antisense
GAACTCAAGCGGCCACTTATGCCAA 74 349 2071 Antisense
AGTAAATACAATCTTCCCAACGCCT 586 1 2110 Antisense
CCTCCTCGGTCAAGGTCCAAGTGGA 620 265 2136 Antisense
AATGCAAGAACAACAGGCTCCACCA 232 165 2160 Antisense
GACAAGGATCCCATCTTCAGGGGCC 345 365 2240 Antisense
CACCTCCACAACATTTCCAAATGGA 17 201 2270 Antisense
AGGAGGTATTCCACATCAACATCAA 113 57 2316 Antisense
GGAGGTCCATCATCTGGATCTGGTC 124 517 2350 Antisense
GGGATTCATAGGCTTCCTGATTTGA 223 497 2398 Antisense
Sequence Source Affymetrix Proprietary Database