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[192390_at]

Description C07G2.1 /REP_DB=WormBase Gene ID /WP=CE00665 /GEN=cej-1 /TR=Q17802 /GB=CAA83679.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Endochitinase (partial)
Cluster 6grp_high1_10_10 > 88      4grp_high_8_8 > 38      6grp_total > 98      4grp_total > 33      6grp_cgc > 69      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 525.6
(-3)
A 		549.8
(-1.6)
P 		627.6
(3)
P 		625.2
(2.9)
P 		102
B 539
(-3)
A 		565.5
(0.4)
P 		545.3
(-2.2)
P 		585.8
(3)
P 		47
C 471.8
(-3)
P 		679.9
(3)
P 		566.5
(-0.3)
P 		535.7
(-1.2)
P 		208
avr 512.1
(-3) 		598.4
(3) 		579.8
(1.7) 		582.2
(1.9) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11289
1 2 3 4 5 6 range
A 448.9
(-3)
M 		429.6
(-3)
P 		457.3
(-3)
P 		1259.6
(-2.6)
P 		5772.6
(-0.1)
P 		11598.2
(3)
P 		11169
B 309
(-3)
P 		351.7
(-3)
P 		709.5
(-2.7)
P 		1107
(-2.5)
P 		5679.5
(0.5)
P 		9526.4
(3)
P 		9217
C 328.5
(-3)
M 		401.9
(-2.9)
M 		756
(-2.7)
P 		996.1
(-2.5)
P 		6956.8
(1.7)
P 		8723.4
(3)
P 		8395
avr 362.1
(-3) 		394.4
(-3) 		640.9
(-2.8) 		1120.9
(-2.5) 		6136.3
(0.6) 		9949.3
(3) 		9587
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 191.4
(3)
A 		119.3
(-1.3)
P 		164.1
(1.4)
P 		91.5
(-3)
P 		100
B 171.9
(3)
A 		139.7
(-1.1)
P 		126.4
(-2.8)
P 		124.8
(-3)
P 		47
C 156.2
(0.7)
P 		195.5
(2.9)
P 		197.4
(3)
P 		90.3
(-3)
P 		107
avr 173.2
(3) 		151.5
(1.2) 		162.6
(2.1) 		102.2
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3470
1 2 3 4 5 6 range
A 82.8
(-3)
M 		152.8
(-2.8)
P 		99.6
(-3)
P 		319.5
(-2.5)
P 		1741.9
(0.6)
P 		2823.8
(3)
P 		2741
B 107.5
(-3)
P 		117.1
(-3)
P 		172.3
(-2.9)
P 		293.2
(-2.7)
P 		2307.5
(0.8)
P 		3552.4
(3)
P 		3445
C 121.8
(-3)
M 		122.6
(-3)
M 		192.4
(-2.8)
P 		200.3
(-2.8)
P 		2251.1
(1.6)
P 		2920.2
(3)
P 		2798
avr 104
(-3) 		130.8
(-2.9) 		154.8
(-2.9) 		271
(-2.7) 		2100.2
(1) 		3098.8
(3) 		2995
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192390_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7534
Sequence Type Exemplar sequence
Representative Public ID C07G2.1 NCBI
Target Description C07G2.1 /REP_DB=WormBase Gene ID /WP=CE00665 /GEN=cej-1 /TR=Q17802 /GB=CAA83679.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Endochitinase (partial)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025988(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025988 NCBI Caenorhabditis elegans CEll Junction protein family member (cej-1) (cej-1) mRNA, complete cds. 11/11 None
SNAP00000003822 ENSEMBL cdna:SNAP chromosome:CEL140:III:4489329:4491228:1 11/11 None
GENEFINDER00000003827 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4489329:4491228:1 11/11 None
C07G2.1a.2 ENSEMBL cdna:known chromosome:CEL140:III:4489323:4491338:1 gene:C07G2.1 11/11 None
C07G2.1a.1 ENSEMBL cdna:known chromosome:CEL140:III:4489325:4491347:1 gene:C07G2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001025989 1/11 Cross Hyb Matching Probes None
C07G2.1b 1/11 Cross Hyb Matching Probes B 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175586 2 1 NM_001025988 192390_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4489328-4491228(+) 100.0 100.0
Public Domain and Genome References
Ensembl C07G2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83679 Hypothetical protein C07G2.1a [Caenorhabditis elegans] ref|NP_001021159.1| CEll Junction protein family member (cej-1) [Caenorhabditis elegans] sp|Q17802|CEJ1_CAEEL Cytokinesis protein cej-1 precursor (Cell junction protein 1) 0.0
blast CAE60360 Hypothetical protein CBG03957 [Caenorhabditis briggsae] 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.4E-19
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.6E-18
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 6.0E-13
Sequence
Target Sequence 
>C. ELEGANS:192390_AT
acaaccaccgtcggttatgagccagaaatcgttgagactaccgctccatatgtcgaagag
acgacaactgccgccgacgttccatcaaccacagccgtatatgagccagaagtcgttgaa
accacaactgaagctgaagttccaaccaccaccaccgtcggatatgagccagaagtcgtt
gagacaactgttccatacgtcgaagagaccaccactgccgctgacgtcccaacaaccacc
gtcggatacgaaccagaagttgaagagaccacaactgaagctgaagttccaaccaccacc
gtcggatacgagtcagaagtcgttgaaaccactgcagctgatatcccaaccacaactatc
ggttacgctccaattgttgtcgaaagcactaccgctgctgatgtgccaaccactaccgtt
ccagctgaaactaccacagaagtcccagcttgtgtcgagggagccactgcaatcgagcca
tgctctcaacactacaagaactgcgtcaatgggcaagaggcaatcttcatctgcgagaac
ggattgttcttctcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACCACCGTCGGTTATGAGCCAG 236 111 1141 Antisense
AGACTACCGCTCCATATGTCGAAGA 707 69 1175 Antisense
TCGAAGAGACGACAACTGCCGCCGA 60 601 1193 Antisense
TTCCATCAACCACAGCCGTATATGA 350 699 1220 Antisense
GAGACAACTGTTCCATACGTCGAAG 226 393 1321 Antisense
TCCCAACAACCACCGTCGGATACGA 460 595 1367 Antisense
CACCACCGTCGGATACGAGTCAGAA 389 201 1434 Antisense
GAAACCACTGCAGCTGATATCCCAA 278 359 1465 Antisense
CTATCGGTTACGCTCCAATTGTTGT 135 219 1496 Antisense
AAAGCACTACCGCTGCTGATGTGCC 551 123 1523 Antisense
GCGAGAACGGATTGTTCTTCTCCCC 283 289 1673 Antisense
Sequence Source Affymetrix Proprietary Database