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[192389_at]

Description F11A3.2 /REP_DB=WormBase Gene ID /WP=CE05586 /TR=Q18748 /GB=CAA94749.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=guanine nucleotide exchange factor
Cluster 6grp_high1_10_10 > 06      6grp_total > 06      4grp_total > 47      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 226.7
(3)
P 		77.2
(-3)
A 		91.4
(-2.4)
A 		120.5
(-1.3)
P 		150
B 246.4
(3)
A 		87.6
(-2.5)
A 		107.9
(-1.8)
P 		73.8
(-3)
P 		173
C 201.6
(3)
P 		102.4
(-3)
A 		133.6
(-1.1)
M 		159.1
(0.4)
P 		99
avr 224.9
(3) 		89.1
(-3) 		111
(-2) 		117.8
(-1.7) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 158.1
(3)
P 		123.5
(0.6)
P 		136.3
(1.5)
M 		118.1
(0.2)
P 		110.2
(-0.3)
P 		71.1
(-3)
A 		87
B 150.1
(3)
P 		140.2
(2.1)
P 		123.9
(0.6)
P 		110.7
(-0.6)
A 		111.2
(-0.6)
P 		84.8
(-3)
P 		65
C 178.2
(3)
P 		142
(-0.1)
M 		127
(-1.4)
A 		110.5
(-2.8)
M 		113.1
(-2.6)
A 		108.2
(-3)
P 		70
avr 162.1
(3) 		135.2
(0.8) 		129.1
(0.3) 		113.1
(-1) 		111.5
(-1.1) 		88
(-3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 82.6
(3)
P 		16.8
(-3)
A 		23.9
(-2.4)
A 		17.6
(-2.9)
P 		66
B 78.6
(3)
A 		21.6
(-2.4)
A 		25
(-2.1)
P 		15.7
(-3)
P 		63
C 66.7
(3)
P 		29.4
(-2.6)
A 		46.6
(-0)
M 		26.8
(-3)
P 		40
avr 76
(3) 		22.6
(-2.7) 		31.8
(-1.7) 		20
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 29.1
(-0.3)
P 		43.9
(3)
P 		29.7
(-0.2)
M 		30
(-0.1)
P 		33.3
(0.6)
P 		17.3
(-3)
A 		27
B 52.2
(3)
P 		46.7
(1.6)
P 		30.1
(-2.8)
P 		29.3
(-3)
A 		45.2
(1.2)
P 		31.6
(-2.4)
P 		23
C 66
(3)
P 		43.3
(-0.1)
M 		32.3
(-1.6)
A 		22.2
(-3)
M 		36.6
(-1)
A 		36.2
(-1.1)
P 		44
avr 49.1
(3) 		44.6
(1.8) 		30.7
(-2) 		27.2
(-3) 		38.4
(0.1) 		28.4
(-2.7) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192389_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12178
Sequence Type Exemplar sequence
Representative Public ID F11A3.2 NCBI
Target Description F11A3.2 /REP_DB=WormBase Gene ID /WP=CE05586 /TR=Q18748 /GB=CAA94749.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=guanine nucleotide exchange factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028613(11), NM_001028614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028613 NCBI Caenorhabditis elegans F11A3.2a (F11A3.2) mRNA, complete cds. 11/11 None
NM_001028614 NCBI Caenorhabditis elegans F11A3.2b (F11A3.2) mRNA, complete cds. 11/11 None
SNAP00000009305 ENSEMBL cdna:SNAP chromosome:CEL140:V:9517550:9519755:1 11/11 None
GENEFINDER00000009323 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9517550:9519755:1 11/11 None
F11A3.2 ENSEMBL cdna:known chromosome:CEL140:V:9516438:9520158:1 gene:F11A3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9516500-9519755(+) 100.0 100.0
Public Domain and Genome References
Ensembl F11A3.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94752 Hypothetical protein F11A3.2a [Caenorhabditis elegans] emb|CAA94749.1| Hypothetical protein F11A3.2a [Caenorhabditis elegans] ref|NP_001023784.1| F11A3.2a [Caenorhabditis elegans] 0.0
blast CAI91168 Hypothetical protein F11A3.2b [Caenorhabditis elegans] emb|CAI91163.1| Hypothetical protein F11A3.2b [Caenorhabditis elegans] ref|NP_001023785.1| F11A3.2b [Caenorhabditis elegans] 0.0
blast CAE72186 Hypothetical protein CBG19294 [Caenorhabditis briggsae] 0.0
blast CAI91168 Hypothetical protein F11A3.2b [Caenorhabditis elegans] emb|CAI91163.1| Hypothetical protein F11A3.2b [Caenorhabditis elegans] ref|NP_001023785.1| F11A3.2b [Caenorhabditis elegans] 1.0E-166
Protein Domains
Database ID Description E-Value
Pfam IPR000649 EMBL-EBI Initiation factor 2B 2.7E-6
Pfam IPR000649 EMBL-EBI Initiation factor 2B 2.7E-6
Pfam IPR000649 EMBL-EBI Initiation factor 2B 2.7E-6
Sequence
Target Sequence 
>C. ELEGANS:192389_AT
tggctataaatttctgtcacgcgtacaaagccatcagtcaactgcttgttcgcaaaattc
aacaattcaaaaaagttgtcgtgttcgattggtgtcctgttgtgaatcatgttcttctgg
aagccaaacaacaaattcctgatatgcaattgtctgttattgatgcaaattccaatggac
gaggtacgcggcatgtgaagagtttcgtagatcaaggatataatgtcaaatacgtcacaa
tgaaaggagcttcatgggcgtccctggcaagtggagttctcattctcggatgttctgcta
tttttgcaaatggtgctgttgctgcacgaaaaggagcattggctgtagttttgtgtgcta
atcactacaatattccagtaattgtagttgctgaacatttcaaattcatcgataaggggc
aagtctatcagcgagtcgctcttcttggccgtcagaatattgagtgcatccaatcggatc
ttgtaactgctgtcgtaacagatcttcgaatccttggaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCTATAAATTTCTGTCACGCGTA 130 545 1031 Antisense
GTCACGCGTACAAAGCCATCAGTCA 600 465 1046 Antisense
GCCATCAGTCAACTGCTTGTTCGCA 503 281 1060 Antisense
GTGTTCGATTGGTGTCCTGTTGTGA 46 485 1111 Antisense
AATGGACGAGGTACGCGGCATGTGA 256 163 1204 Antisense
TGAAAGGAGCTTCATGGGCGTCCCT 583 429 1271 Antisense
GCGTCCCTGGCAAGTGGAGTTCTCA 679 291 1288 Antisense
GAGTTCTCATTCTCGGATGTTCTGC 52 399 1304 Antisense
AGGGGCAAGTCTATCAGCGAGTCGC 325 57 1445 Antisense
ATCGGATCTTGTAACTGCTGTCGTA 289 35 1503 Antisense
ACAGATCTTCGAATCCTTGGACCAA 686 107 1528 Antisense
Sequence Source Affymetrix Proprietary Database