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[192388_at] sodium/phosphate transport protein

Description K08C7.1 /REP_DB=WormBase Gene ID /WP=CE28242 /TR=Q21312 /GB=CAA94292.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=sodium-phosphate transport protein
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 42      4grp_high_8_8 > 48      6grp_highest_nonorm > 81      6grp_total > 82      4grp_total > 62      6grp_high1_sub > 02_03_04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 225
1 2 3 4 range
A 265.8
(3)
P 		153.9
(-1.2)
P 		174.2
(-0.4)
P 		105
(-3)
P 		161
B 305.7
(3)
P 		130.8
(-1.7)
P 		234.9
(1.1)
P 		80.7
(-3)
P 		225
C 283.7
(3)
P 		178
(-0.8)
P 		199.7
(0)
P 		115.3
(-3)
P 		168
avr 285.1
(3) 		154.2
(-1.3) 		202.9
(0.3) 		100.3
(-3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 166.2
(-2.7)
P 		173.8
(-2.4)
P 		291.5
(2.1)
P 		212.5
(-0.9)
P 		315
(3)
P 		157.7
(-3)
P 		157
B 213.2
(-3)
P 		300.8
(-0.1)
P 		220.7
(-2.8)
P 		395.5
(3)
P 		307.7
(0.1)
P 		244.5
(-2)
P 		182
C 215.9
(-2)
P 		334.6
(3)
P 		206.5
(-2.4)
P 		230.4
(-1.4)
P 		191.7
(-3)
P 		223.7
(-1.7)
P 		143
avr 198.4
(-3) 		269.7
(2.3) 		239.6
(0) 		279.5
(3) 		271.5
(2.4) 		208.6
(-2.2) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 96.8
(3)
P 		33.4
(-1.7)
P 		45.5
(-0.8)
P 		15.4
(-3)
P 		81
B 97.5
(3)
P 		32.3
(-1.9)
P 		54.4
(-0.2)
P 		17.2
(-3)
P 		80
C 93.9
(3)
P 		51.2
(-0.4)
P 		69.6
(1)
P 		19.4
(-3)
P 		75
avr 96.1
(3) 		39
(-1.3) 		56.5
(-0) 		17.3
(-3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 30.6
(-3)
P 		61.8
(-0.1)
P 		63.5
(0.1)
P 		53.9
(-0.8)
P 		95.1
(3)
P 		38.4
(-2.3)
P 		65
B 74.2
(-1.3)
P 		100.1
(0.9)
P 		53.6
(-3)
P 		104.7
(1.3)
P 		125
(3)
P 		91.2
(0.2)
P 		71
C 80
(0.6)
P 		102.1
(3)
P 		52.6
(-2.3)
P 		46.3
(-3)
P 		62
(-1.3)
P 		74.9
(0.1)
P 		56
avr 61.6
(-2.2) 		88
(2) 		56.6
(-3) 		68.3
(-1.1) 		94
(3) 		68.2
(-1.1) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192388_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9613
Sequence Type Exemplar sequence
Representative Public ID K08C7.1 NCBI
Target Description K08C7.1 /REP_DB=WormBase Gene ID /WP=CE28242 /TR=Q21312 /GB=CAA94292.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=sodium-phosphate transport protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069566(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069566 NCBI Caenorhabditis elegans K08C7.1 (K08C7.1) mRNA, complete cds. 11/11 None
SNAP00000016920 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10658367:10660605:1 10/11 None
GENEFINDER00000016927 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10657060:10660605:1 11/11 None
K08C7.1 ENSEMBL cdna:known chromosome:CEL140:IV:10656878:10660727:1 gene:K08C7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10655391-10660611(+) 100.0 100.0
Public Domain and Genome References
Gene Title sodium/phosphate transport protein
Ensembl K08C7.1
Entrez Gene 177953 Entrez gene
SwissProt Q21312 EMBL-EBI
WormBase CE36700 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94292 Hypothetical protein K08C7.1 [Caenorhabditis elegans] ref|NP_501967.2| K08C7.1 [Caenorhabditis elegans] 0.0
blast CAE60744 Hypothetical protein CBG04430 [Caenorhabditis briggsae] 0.0
blast CAE60744 Hypothetical protein CBG04430 [Caenorhabditis briggsae] 1.0E-175
blast CAE60744 Hypothetical protein CBG04430 [Caenorhabditis briggsae] 1.0E-155
blast AAB04605 Hypothetical protein T28H11.8 [Caenorhabditis elegans] ref|NP_500705.2| T28H11.8 [Caenorhabditis elegans] 4.0E-53
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501967.2 12 7-26,50-72,79-101,105-122,135-157,167-186,232-254,264-286,299-321,325-347,360-379,394-413
K08C7.1 12 7-26,50-72,79-101,105-122,135-157,167-186,232-254,264-286,299-321,325-347,360-379,394-413
SNAP00000016920 9 65-87,92-114,127-149,159-178,224-246,256-278,295-312,316-338,406-428
GENEFINDER00000016927 11 39-61,74-96,100-119,132-154,164-183,229-251,261-283,296-318,322-344,357-376,391-410
Sequence
Target Sequence 
>C. ELEGANS:192388_AT
gacacaactgtttgggccacatggtttgctaatcttgcattcttctcatcccttttagtt
tttctgcaatatggaccactgtacatgaacaaggttctcggattttctgttcgagtgacc
gggtattccggtggtttggctcacgtgttttgtttggttgctaaagtaatatttgggaaa
attatggacaatagcaaaatggatatgacaaaacgattgaaagcagcatggacttttata
gagatcccatctcttgcgcttttattgattttaatttttattcatgatgcttacattcaa
atgatttgcattgtcatcttcatcacaatccatggagttgccattattattattgtgaaa
actcaaacttatagatcagcggagcacaaccacgtgcttgcaaatggaaatacgctttgt
gtcgttttcagtacatcccttcagcctctactcatcaaatttttggttcaatcgaacacg
tttgaagaatggtcccgagtgtttggtctacatgctatcataattcttatctctgtgatc
ctcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACAACTGTTTGGGCCACATGGT 670 365 895 Antisense
TTTGCTAATCTTGCATTCTTCTCAT 209 669 919 Antisense
TTCTCATCCCTTTTAGTTTTTCTGC 216 691 937 Antisense
GGATTTTCTGTTCGAGTGACCGGGT 137 509 994 Antisense
GGCTCACGTGTTTTGTTTGGTTGCT 702 537 1032 Antisense
CCCATCTCTTGCGCTTTTATTGATT 362 259 1140 Antisense
GATTTGCATTGTCATCTTCATCACA 1 429 1197 Antisense
TTTGTGTCGTTTTCAGTACATCCCT 409 667 1310 Antisense
TTCAGCCTCTACTCATCAAATTTTT 573 685 1334 Antisense
GAATGGTCCCGAGTGTTTGGTCTAC 44 331 1381 Antisense
AATTCTTATCTCTGTGATCCTCTTT 216 177 1416 Antisense
Sequence Source Affymetrix Proprietary Database