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[192385_at] Ogre family (2 domains)

Description T23H4.1 /REP_DB=WormBase Gene ID /WP=CE25125 /GEN=lep-1 /TR=P91827 /GB=CAB05813.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Ogre family (2 domains)
Cluster 6grp_high1_10_10 > 26      4grp_high_8_8 > 16      6grp_total > 25      4grp_total > 39      6grp_cgc > 33      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 110
(3)
P 		29.7
(-3)
A 		57.5
(-0.9)
P 		85.4
(1.2)
M 		80
B 90.5
(3)
P 		35.2
(-3)
P 		71.4
(0.9)
P 		56.3
(-0.7)
A 		55
C 140.2
(3)
P 		47.2
(-3)
P 		49.2
(-2.9)
P 		71
(-1.5)
P 		93
avr 113.6
(3) 		37.4
(-3) 		59.4
(-1.3) 		70.9
(-0.4) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 102.2
(3)
P 		97.8
(2.5)
P 		84.2
(1)
P 		47.5
(-3)
P 		60.2
(-1.6)
P 		60.5
(-1.6)
P 		55
B 117.2
(3)
P 		96
(1.3)
P 		70.4
(-0.8)
P 		59.2
(-1.7)
A 		46.3
(-2.8)
P 		43.3
(-3)
P 		74
C 78.4
(0.7)
P 		109.4
(3)
P 		47.7
(-1.5)
P 		27.9
(-3)
A 		65
(-0.3)
P 		74.8
(0.5)
P 		82
avr 99.3
(2.8) 		101.1
(3) 		67.4
(-0.6) 		44.9
(-3) 		57.2
(-1.7) 		59.5
(-1.4) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 40
(3)
P 		6.4
(-3)
A 		15
(-1.5)
P 		12.5
(-1.9)
M 		34
B 28.8
(3)
P 		8.7
(-3)
P 		16.6
(-0.6)
P 		12
(-2)
A 		20
C 46.4
(3)
P 		13.6
(-2.7)
P 		17.1
(-2.1)
P 		12
(-3)
P 		34
avr 38.4
(3) 		9.6
(-3) 		16.2
(-1.6) 		12.2
(-2.5) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 18.8
(-1.2)
P 		34.8
(3)
P 		18.3
(-1.3)
P 		12
(-3)
P 		18.2
(-1.4)
P 		14.7
(-2.3)
P 		23
B 40.8
(3)
P 		31.9
(0.9)
P 		17.1
(-2.7)
P 		15.7
(-3)
A 		18.8
(-2.3)
P 		16.1
(-2.9)
P 		25
C 29.1
(2.1)
P 		33.4
(3)
P 		12.1
(-1.6)
P 		5.6
(-3)
A 		21
(0.3)
P 		25
(1.2)
P 		28
avr 29.6
(2) 		33.4
(3) 		15.8
(-1.7) 		11.1
(-3) 		19.3
(-0.8) 		18.6
(-1) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192385_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.822
Sequence Type Exemplar sequence
Representative Public ID T23H4.1 NCBI
Target Description T23H4.1 /REP_DB=WormBase Gene ID /WP=CE25125 /GEN=lep-1 /TR=P91827 /GB=CAB05813.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Ogre family (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060213(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060213 NCBI Caenorhabditis elegans INneXin family member (inx-20) (inx-20) mRNA, complete cds. 11/11 None
SNAP00000007943 ENSEMBL cdna:SNAP chromosome:CEL140:I:9884649:9887240:1 11/11 None
GENEFINDER00000007947 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9885090:9887240:1 11/11 None
T23H4.1 ENSEMBL cdna:known chromosome:CEL140:I:9884649:9887240:1 gene:T23H4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9884579-9887171(+) 100.0 100.0
Public Domain and Genome References
Gene Title Ogre family (2 domains)
Gene Symbol inx-20
Ensembl T23H4.1
Entrez Gene 188818 Entrez gene
SwissProt P91827 EMBL-EBI
WormBase CE25125 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05813 Hypothetical protein T23H4.1 [Caenorhabditis elegans] ref|NP_492614.1| INneXin family member (inx-20) [Caenorhabditis elegans] 0.0
blast CAE60268 Hypothetical protein CBG03845 [Caenorhabditis briggsae] 0.0
blast CAE64022 Hypothetical protein CBG08617 [Caenorhabditis briggsae] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 3.0E-113
Pfam IPR000990 EMBL-EBI Innexin 9.6E-104
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492614.1 4 51-73,128-150,219-241,311-333
T23H4.1 4 51-73,128-150,219-241,311-333
SNAP00000007943 4 51-73,128-150,219-241,311-333
GENEFINDER00000007947 4 25-47,96-118,187-209,279-301
Sequence
Target Sequence 
>C. ELEGANS:192385_AT
tactgtccagtgtgttcttgttatcaatatttttacagaaaagatatttttcattctatg
gctctggtacaccatgttatctctaatttcctttggatccatactctcatggatttttgc
atcaattccatttaatcaacgaagacaatttattgctagaagactagaattggctgatgt
taatttcgaaaaaagccgattcaaacaagaacttgatgagtttgttcgtgactatataaa
aatcgatggaattttcgtgttacgaatgattacaatacattctggtattcttatgtgtac
ggatattgttgatacaatgtgggatcagtttttacaagaatcaggacatgcaacaatcag
agagattttggaagataaaagttacggtgacgactatgatagatctgcttctgctggtgg
tttatctattgaaccaagtctgcgacggaaaacatcagttttggttcctctcatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTGTCCAGTGTGTTCTTGTTATC 348 647 891 Antisense
GATATTTTTCATTCTATGGCTCTGG 409 427 933 Antisense
GGCTCTGGTACACCATGTTATCTCT 298 539 950 Antisense
GTTATCTCTAATTTCCTTTGGATCC 575 447 966 Antisense
CATACTCTCATGGATTTTTGCATCA 70 215 990 Antisense
TGCATCAATTCCATTTAATCAACGA 708 573 1008 Antisense
CATTCTGGTATTCTTATGTGTACGG 584 215 1168 Antisense
GACTATGATAGATCTGCTTCTGCTG 437 373 1282 Antisense
GCTTCTGCTGGTGGTTTATCTATTG 149 307 1297 Antisense
TCTATTGAACCAAGTCTGCGACGGA 287 607 1315 Antisense
AACATCAGTTTTGGTTCCTCTCATG 143 137 1341 Antisense
Sequence Source Affymetrix Proprietary Database