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[192384_s_at] Zinc finger, C2H2 type (3 domains)

Description T08G5.7 /REP_DB=WormBase Gene ID /WP=CE18947 /TR=Q9XUQ5 /GB=CAB04719.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (3 domains)
Cluster 6grp_total > 43      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 85.8
(-2.2)
M 		76.2
(-3)
A 		110.8
(0.1)
M 		144
(3)
P 		68
B 87
(2.2)
P 		77.8
(1)
A 		49.1
(-3)
A 		92.6
(3)
A 		44
C 90.3
(-1.6)
A 		122.1
(-0.4)
P 		55.2
(-3)
A 		210.9
(3)
P 		156
avr 87.7
(-1.8) 		92
(-1.4) 		71.7
(-3) 		149.2
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 101.9
(2.7)
A 		84.7
(1.1)
P 		77.5
(0.5)
P 		43
(-2.7)
A 		105
(3)
A 		39.6
(-3)
A 		65
B 63.4
(-0.4)
P 		64.6
(-0.2)
P 		84.6
(3)
M 		74.5
(1.4)
A 		71.6
(0.9)
P 		46.8
(-3)
A 		38
C 31.8
(-3)
A 		73.4
(1)
P 		93.6
(3)
P 		53.4
(-0.9)
A 		53.8
(-0.9)
A 		67.5
(0.5)
P 		62
avr 65.7
(-0.5) 		74.2
(1.1) 		85.2
(3) 		57
(-2) 		76.8
(1.5) 		51.3
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 31.3
(3)
M 		16.5
(-3)
A 		29
(2.1)
M 		21.1
(-1.1)
P 		15
B 27.7
(3)
P 		19.2
(-0.1)
A 		11.4
(-3)
A 		19.7
(0.1)
A 		16
C 29.9
(0.9)
A 		35.1
(2.8)
P 		19.2
(-3)
A 		35.6
(3)
P 		16
avr 29.6
(3) 		23.6
(-0.7) 		19.9
(-3) 		25.5
(0.5) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 18.8
(-0.5)
A 		30.1
(2.6)
P 		16.9
(-1)
P 		10.9
(-2.6)
A 		31.7
(3)
A 		9.6
(-3)
A 		22
B 22.1
(-0.6)
P 		21.5
(-0.9)
P 		20.5
(-1.4)
M 		19.7
(-1.9)
A 		29.1
(3)
P 		17.5
(-3)
A 		12
C 11.8
(-2.5)
A 		22.4
(2.4)
P 		23.8
(3)
P 		10.7
(-3)
A 		17.4
(0.1)
A 		22.6
(2.5)
P 		13
avr 17.6
(-1.1) 		24.7
(2.3) 		20.4
(0.2) 		13.8
(-3) 		26.1
(3) 		16.6
(-1.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192384_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13735
Sequence Type Exemplar sequence
Representative Public ID T08G5.7 NCBI
Target Description T08G5.7 /REP_DB=WormBase Gene ID /WP=CE18947 /TR=Q9XUQ5 /GB=CAB04719.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (3 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074086(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074086 NCBI Caenorhabditis elegans T08G5.7 (T08G5.7) mRNA, complete cds. 11/11 None
SNAP00000041564 ENSEMBL cdna:SNAP chromosome:CEL140:IV:771421:772889:1 11/11 None
GENEFINDER00000041578 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:771603:772889:1 10/11 None
GENEFINDER00000009130 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14046902:14047805:1 11/11 None
T08G5.7 ENSEMBL cdna:known chromosome:CEL140:V:14046902:14047805:1 gene:T08G5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067585 6/11 Cross Hyb Matching Probes A 
SNAP00000009116 7/11 Cross Hyb Matching Probes None
SNAP00000016870 7/11 Cross Hyb Matching Probes None
GENEFINDER00000016875 7/11 Cross Hyb Matching Probes None
F56B3.9 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:771366-772202(+) 90.92 90.92
chrV:14046901-14047805(+) 100.0 100.0
chrV:14051404-14052308(-) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (3 domains)
Ensembl T08G5.7
Entrez Gene 188304 Entrez gene
SwissProt Q9XUQ5 EMBL-EBI
WormBase CE18947 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast B88633 protein F56B3.9 [imported] - Caenorhabditis elegans 0.0
blast B88633 protein F56B3.9 [imported] - Caenorhabditis elegans 1.0E-151
blast CAB04719 Hypothetical protein T08G5.7 [Caenorhabditis elegans] ref|NP_506487.1| T08G5.7 [Caenorhabditis elegans] 1.0E-148
blast B88633 protein F56B3.9 [imported] - Caenorhabditis elegans 1.0E-136
blast CAB04719 Hypothetical protein T08G5.7 [Caenorhabditis elegans] ref|NP_506487.1| T08G5.7 [Caenorhabditis elegans] 1.0E-124
blast CAB04719 Hypothetical protein T08G5.7 [Caenorhabditis elegans] ref|NP_506487.1| T08G5.7 [Caenorhabditis elegans] 6.0E-59
Sequence
Target Sequence 
>C. ELEGANS:192384_S_AT
gaagtgtcccgtatgcgaactagttattccaacagagaaaggcttgaagaaccatatgaa
ccagaagcacaggaagaagcccatcgatccttcgacaatcactcttgctacaacgtcgcc
cacaatggtctcgcctcctcccaagagaatccagctacccaaatcgacggaaaaatcgct
tgtttcttcagtagctacagttcgagcccaaccaactcagaaaccaggaggaaggtacaa
atgccctgtggaaaactgtactttcttcaagacaaggaaggaattagcgcttcatttctc
agaaaaacatgatcctggatctgagctggaaactatgagcttcgaaacggaaactgagtt
caaaatttggctcacctgtcgacaagaagagacgtgtagtagcatgcagatctctctcag
ctctcacgatggaaaccgcatcacccattttcgcctctgcagacacgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTGTCCCGTATGCGAACTAGTT 224 335 243 Antisense
CAGGAAGAAGCCCATCGATCCTTCG 108 209 312 Antisense
CCTTCGACAATCACTCTTGCTACAA 266 269 331 Antisense
GAATCCAGCTACCCAAATCGACGGA 462 327 389 Antisense
ATCGCTTGTTTCTTCAGTAGCTACA 542 37 417 Antisense
TTCGAGCCCAACCAACTCAGAAACC 325 693 443 Antisense
AAGGAATTAGCGCTTCATTTCTCAG 383 161 520 Antisense
AAATTTGGCTCACCTGTCGACAAGA 136 117 605 Antisense
AGTAGCATGCAGATCTCTCTCAGCT 593 61 640 Antisense
TCTCTCAGCTCTCACGATGGAAACC 126 609 655 Antisense
CATTTTCGCCTCTGCAGACACGAAG 701 215 688 Antisense
Sequence Source Affymetrix Proprietary Database