[Home] | [Total List]

[192383_s_at]

Description R151.2 /REP_DB=WormBase Gene ID /WP=CE00745 /CHR=3 /FEA=Sanger Annotation /DEF=Ribose-phosphate pyrophosphokinase (ST.LOUIS) TR:Q21994 protein_id:AAA50652.1
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 58      6grp_total > 66      4grp_total > 16      6grp_highest_sub > Da      6grp_high1_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6972
1 2 3 4 range
A 2303.7
(-3)
P 		3435
(-1.1)
P 		4952.5
(1.5)
P 		5874.6
(3)
P 		3571
B 1715.8
(-3)
P 		3963.8
(-1.1)
P 		4096
(-1)
P 		8687.4
(3)
P 		6972
C 2350.6
(-3)
P 		3980.3
(-1.2)
P 		5273
(0.2)
P 		7868
(3)
P 		5517
avr 2123.4
(-3) 		3793
(-1.1) 		4773.8
(-0) 		7476.7
(3) 		5353

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2840
1 2 3 4 5 6 range
A 1872.2
(-3)
P 		3099.8
(-0.4)
P 		3271.5
(-0)
P 		3048
(-0.5)
P 		2316.1
(-2.1)
P 		4712.2
(3)
P 		2840
B 2004.9
(-3)
P 		3158.7
(-0.2)
P 		3027.3
(-0.5)
P 		2797
(-1.1)
P 		2479.6
(-1.9)
P 		4495.9
(3)
P 		2491
C 2337
(-3)
P 		3158.5
(-0.7)
P 		3379
(-0.1)
P 		2513.3
(-2.5)
P 		2538
(-2.4)
P 		4477.7
(3)
P 		2141
avr 2071.4
(-3) 		3139
(-0.4) 		3225.9
(-0.2) 		2786.1
(-1.3) 		2444.6
(-2.1) 		4561.9
(3) 		2491
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1304
1 2 3 4 range
A 838.8
(-2)
P 		745.6
(-3)
P 		1294.7
(3)
P 		859.9
(-1.8)
P 		549
B 547.2
(-3)
P 		979
(-1)
P 		949.1
(-1.2)
P 		1851.3
(3)
P 		1304
C 778.1
(-3)
P 		1144.4
(-0.9)
P 		1837.8
(3)
P 		1326.7
(0.1)
P 		1060
avr 721.4
(-3) 		956.3
(-0.8) 		1360.5
(3) 		1346
(2.9) 		639

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1331
1 2 3 4 5 6 range
A 345.1
(-3)
P 		1102.4
(2.7)
P 		712.5
(-0.3)
P 		773
(0.2)
P 		698.9
(-0.4)
P 		1147.3
(3)
P 		802
B 697.6
(-3)
P 		1051.4
(-0.8)
P 		735.1
(-2.8)
P 		740.8
(-2.7)
P 		1007.4
(-1.1)
P 		1676.5
(3)
P 		979
C 866.2
(-0.8)
P 		963.8
(-0.2)
P 		860
(-0.9)
P 		505.4
(-3)
P 		821.3
(-1.1)
P 		1498.9
(3)
P 		994
avr 636.3
(-3) 		1039.2
(0) 		769.2
(-2) 		673.1
(-2.7) 		842.5
(-1.5) 		1440.9
(3) 		805
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192383_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6393
Sequence Type Exemplar sequence
Representative Public ID R151.2 NCBI
Target Description R151.2 /REP_DB=WormBase Gene ID /WP=CE00745 /CHR=3 /FEA=Sanger Annotation /DEF=Ribose-phosphate pyrophosphokinase (ST.LOUIS) TR:Q21994 protein_id:AAA50652.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027557(11), NM_066184(11), NM_066185(11), NM_066186(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027557 NCBI Caenorhabditis elegans R151.2d (R151.2) mRNA, complete cds. 11/11 None
NM_066184 NCBI Caenorhabditis elegans R151.2b (R151.2) mRNA, complete cds. 11/11 None
NM_066185 NCBI Caenorhabditis elegans R151.2a (R151.2) mRNA, complete cds. 11/11 None
NM_066186 NCBI Caenorhabditis elegans R151.2c (R151.2) mRNA, complete cds. 11/11 None
SNAP00000037934 ENSEMBL cdna:SNAP chromosome:CEL140:III:7212541:7214638:1 11/11 None
GENEFINDER00000037947 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7212541:7214638:1 11/11 None
R151.2d.2 ENSEMBL cdna:known chromosome:CEL140:III:7209891:7215035:1 gene:R151.2 11/11 None
R151.2d.1 ENSEMBL cdna:known chromosome:CEL140:III:7209997:7215197:1 gene:R151.2 11/11 None
R151.2b.4 ENSEMBL cdna:known chromosome:CEL140:III:7211348:7214638:1 gene:R151.2 11/11 None
R151.2b.1 ENSEMBL cdna:known chromosome:CEL140:III:7211366:7214638:1 gene:R151.2 11/11 None
R151.2a ENSEMBL cdna:known chromosome:CEL140:III:7212455:7214638:1 gene:R151.2 11/11 None
R151.2b.3 ENSEMBL cdna:known chromosome:CEL140:III:7212658:7214638:1 gene:R151.2 11/11 None
R151.2b.2 ENSEMBL cdna:known chromosome:CEL140:III:7212659:7214638:1 gene:R151.2 11/11 None
R151.2c ENSEMBL cdna:known chromosome:CEL140:III:7213100:7214638:1 gene:R151.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7212538-7214636(+) 100.0 100.0
Public Domain and Genome References
Ensembl R151.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT92064 Hypothetical protein R151.2d [Caenorhabditis elegans] ref|NP_001022728.1| R151.2d [Caenorhabditis elegans] 0.0
blast AAK29853 Hypothetical protein R151.2a [Caenorhabditis elegans] ref|NP_498586.1| R151.2a [Caenorhabditis elegans] 0.0
blast CAE70156 Hypothetical protein CBG16623 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000836 EMBL-EBI Phosphoribosyltransferase 1.8E-39
Pfam IPR000836 EMBL-EBI Phosphoribosyltransferase 1.8E-39
Pfam IPR000836 EMBL-EBI Phosphoribosyltransferase 1.8E-39
Pfam IPR000836 EMBL-EBI Phosphoribosyltransferase 1.8E-39
Sequence
Target Sequence 
>C. ELEGANS:192383_S_AT
ttccgttgctggtgctgatcatatcatcacaatggatttacatgcatcacagattcaagg
gttcttcgatattccggtagacaacttgtacgctgagccagcaattctgaagtacatcaa
ggaatctattccaaactggcagacctcggttattgtatctccggatgccggaggtgccaa
gagagtaacctccattgccgatcgtctcaatgtggactttgccttgattcacaaagaaag
caaacgtgccaatgaagttgagaagatgactttggtcggatccgtcgaaggaaaagtggc
gattttggttgatgacatggctgatacatgtggaacaatttgcatggcagccgacaaatt
ggttgaagccggagcagacaaagtatacgctttctgtgttcatggaatcttctcaggacc
agctctcactcgtctcaatgcttcaaagtttgaagctgtcgtcgtgacaaacacaattcc
ccaagatgagaatatgaagaagtgctcgaagatccagtgtatcgacatctcaatgatctt
ggcagaagcaatccgccgtacacacaatggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCGTTGCTGGTGCTGATCATATC 553 699 534 Antisense
CAAGGGTTCTTCGATATTCCGGTAG 689 183 589 Antisense
GACAACTTGTACGCTGAGCCAGCAA 33 367 613 Antisense
GGCAGACCTCGGTTATTGTATCTCC 224 537 671 Antisense
TCGTCTCAATGTGGACTTTGCCTTG 335 605 735 Antisense
AGATGACTTTGGTCGGATCCGTCGA 71 67 797 Antisense
AGTATACGCTTTCTGTGTTCATGGA 149 63 915 Antisense
ATGGAATCTTCTCAGGACCAGCTCT 325 53 935 Antisense
CTCACTCGTCTCAATGCTTCAAAGT 146 229 958 Antisense
GTGACAAACACAATTCCCCAAGATG 646 469 997 Antisense
GCAATCCGCCGTACACACAATGGAG 103 323 1081 Antisense
Sequence Source Affymetrix Proprietary Database