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[192382_s_at] thiosulphate sulphurtransferase

Description D2023.5 /REP_DB=WormBase Gene ID /WP=CE09075 /TR=SW:O17730 /GB=CAB02870.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=thiosulphate sulphurtransferase
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 54      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 75      6grp_total > 55      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 783
1 2 3 4 range
A 583.3
(-0.9)
P 		1012
(3)
P 		1010.5
(3)
P 		359.4
(-3)
P 		653
B 569.7
(-2.7)
P 		874.7
(0.3)
P 		1142.1
(3)
P 		536.9
(-3)
P 		605
C 563.1
(-2.1)
P 		919.5
(1.5)
P 		1065.4
(3)
P 		478.1
(-3)
P 		587
avr 572
(-1.9) 		935.4
(1.7) 		1072.7
(3) 		458.1
(-3) 		615

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 611
1 2 3 4 5 6 range
A 808.5
(-1.3)
P 		888
(0)
P 		1073.8
(3)
P 		881.6
(-0.1)
P 		701.5
(-3)
P 		870.1
(-0.3)
P 		372
B 896
(-2.4)
P 		1083.9
(0.2)
P 		1282.7
(3)
P 		853.3
(-3)
P 		920.4
(-2.1)
P 		1119.1
(0.7)
P 		429
C 791.2
(-1.7)
P 		1068.8
(1.3)
P 		868.5
(-0.9)
P 		898.4
(-0.6)
P 		671.6
(-3)
P 		1231
(3)
P 		559
avr 831.9
(-1.7) 		1013.6
(1.8) 		1075
(3) 		877.8
(-0.8) 		764.5
(-3) 		1073.4
(3) 		311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 212.4
(1.5)
P 		219.7
(1.7)
P 		264.2
(3)
P 		52.6
(-3)
P 		212
B 181.7
(-0.3)
P 		216
(1.1)
P 		264.7
(3)
P 		114.4
(-3)
P 		150
C 186.4
(-0.8)
P 		264.4
(0.8)
P 		371.3
(3)
P 		80.6
(-3)
P 		291
avr 193.5
(0.1) 		233.4
(1.2) 		300.1
(3) 		82.5
(-3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 268
1 2 3 4 5 6 range
A 149
(-3)
P 		315.8
(3)
P 		233.9
(0.1)
P 		223.6
(-0.3)
P 		211.7
(-0.7)
P 		211.9
(-0.7)
P 		167
B 311.8
(-0.3)
P 		360.8
(1.2)
P 		311.5
(-0.3)
P 		226
(-3)
P 		373.9
(1.6)
P 		417.3
(3)
P 		191
C 293.3
(-0.1)
P 		326.1
(0.8)
P 		221
(-2)
P 		180.7
(-3)
P 		217.3
(-2.1)
P 		412.1
(3)
P 		231
avr 251.4
(-1.2) 		334.2
(2.4) 		255.5
(-1) 		210.1
(-3) 		267.6
(-0.5) 		347.1
(3) 		137
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192382_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14205
Sequence Type Exemplar sequence
Representative Public ID D2023.5 NCBI
Target Description D2023.5 /REP_DB=WormBase Gene ID /WP=CE09075 /TR=SW:O17730 /GB=CAB02870.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=thiosulphate sulphurtransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073578(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073578 NCBI Caenorhabditis elegans D2023.5 (D2023.5) mRNA, complete cds. 11/11 None
SNAP00000024928 ENSEMBL cdna:SNAP chromosome:CEL140:V:11828573:11829650:-1 11/11 None
GENEFINDER00000024931 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11828573:11829780:-1 11/11 None
D2023.5 ENSEMBL cdna:known chromosome:CEL140:V:11828492:11829655:-1 gene:D2023.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11828572-11829650(-) 100.0 100.0
Public Domain and Genome References
Gene Title thiosulphate sulphurtransferase
Ensembl D2023.5
Entrez Gene 179617 Entrez gene
SwissProt O17730 EMBL-EBI
WormBase CE09075 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262712_AT mercaptopyruvate sulfurtransferase (MST2) (RDH2) at
ATGENOME1:17565_S_AT mercaptopyruvate sulfurtransferase (MST2) (RDH2) at
ATGENOME1:15458_R_AT mercaptopyruvate sulfurtransferase (MST2) (RDH2) at
ATGENOME1:15459_S_AT mercaptopyruvate sulfurtransferase (MST2) (RDH2) at
CHICKEN:GGA.11582.2.S1_A_AT mercaptopyruvate sulfurtransferase gga
CHICKEN:GGA.11582.1.S1_AT similar to 3-mercaptopyruvate sulfurtransferase gga
CHICKEN:GGA.11582.2.S1_A_AT similar to 3-mercaptopyruvate sulfurtransferase gga
CHICKEN:GGA.11582.2.S1_AT Similar to 3-mercaptopyruvate sulfurtransferase gga
Protein Similarities
Method ID Description E-Value
blast CAB02870 Hypothetical protein D2023.5 [Caenorhabditis elegans] ref|NP_505979.1| D2023.5 [Caenorhabditis elegans] sp|O17730|THT2_CAEEL Putative thiosulfate sulfurtransferase D2023.5 0.0
blast CAE75291 Hypothetical protein CBG23259 [Caenorhabditis briggsae] emb|CAE75289.1| Hypothetical protein CBG23257 [Caenorhabditis briggsae] 1.0E-166
blast CAB07429 Hypothetical protein H12D21.7 [Caenorhabditis elegans] ref|NP_506674.2| H12D21.7 [Caenorhabditis elegans] 2.0E-37
Sequence
Target Sequence 
>C. ELEGANS:192382_S_AT
ttggtggaatgctttttgcttcaaaggttgcttggattttcaaatcctatggccatgaaa
acatttctcttgtcgatggaggatttgattcatggaaaagaaatggatttgaagtatcta
cagaactcgtaaaattgcctgcaggaaactttaaagctgaagataatttcaaaaaatatg
tcatcacattccaagaactcgaagctaaaaaagacggcgaagataaacagtttatcgaaa
aaacatcagaaattaactttctggacagcagaattcgtggtcaattcgatggaactcaag
agaccggtcttgatccacatcttgtaaacggcactagaatcgctggtttcaaaaatctac
ctagtgcagagcttcttgtgaaaggcggaaatttgaaaagtgaagaagaaatcaagtcat
ggctcactcaaaacggatatgttgaaaatcaaccgacaatcacatcctgtaatgctggaa
ttcaagcagcacttttggcgtacgtaatcgatgctgtgaagccatcacagaatcctcccc
gcgtatataatggatccttaaaagagatggagcttcgagcaccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGTGGAATGCTTTTTGCTTCAAA 558 707 377 Antisense
GAACTCGTAAAATTGCCTGCAGGAA 322 349 499 Antisense
TATGTCATCACATTCCAAGAACTCG 699 655 553 Antisense
CAAGAGACCGGTCTTGATCCACATC 336 179 673 Antisense
GATCCACATCTTGTAAACGGCACTA 397 415 688 Antisense
AACGGCACTAGAATCGCTGGTTTCA 9 141 703 Antisense
ATCTACCTAGTGCAGAGCTTCTTGT 145 33 731 Antisense
ATCAACCGACAATCACATCCTGTAA 386 27 824 Antisense
AAGCAGCACTTTTGGCGTACGTAAT 504 147 860 Antisense
GAATCCTCCCCGCGTATATAATGGA 95 329 906 Antisense
AAGAGATGGAGCTTCGAGCACCGAA 626 151 938 Antisense
Sequence Source Affymetrix Proprietary Database