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[192381_at] Zinc finger, C2H2 type (5 domains)

Description R06C7.9 /REP_DB=WormBase Gene ID /WP=CE06252 /TR=Q21777 /GB=CAA95846.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (5 domains)
Cluster 6grp_high1_10_10 > 97      4grp_high_8_8 > 39      6grp_total > 97      4grp_total > 08      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 66.8
(-0.9)
A 		37.3
(-3)
A 		79.7
(-0)
P 		122.9
(3)
A 		86
B 68.8
(-3)
P 		102.4
(2.7)
P 		104.3
(3)
P 		92.7
(1)
P 		36
C 74.7
(-1.3)
M 		75.1
(-1.2)
P 		62.6
(-3)
A 		105.3
(3)
M 		43
avr 70.1
(-3) 		71.6
(-2.8) 		82.2
(-1) 		107
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 231
1 2 3 4 5 6 range
A 93.1
(-1.8)
P 		47.6
(-3)
P 		79.7
(-2.2)
P 		111.8
(-1.3)
P 		151.4
(-0.3)
P 		278.5
(3)
P 		231
B 74.6
(-3)
P 		81.2
(-2.8)
P 		133.5
(-0.9)
P 		134.9
(-0.8)
P 		177
(0.7)
P 		241.6
(3)
P 		167
C 77.8
(-2.4)
A 		55.1
(-3)
A 		99.8
(-1.7)
P 		103.2
(-1.6)
P 		223.9
(1.8)
P 		267.1
(3)
P 		212
avr 81.8
(-2.4) 		61.3
(-3) 		104.3
(-1.7) 		116.6
(-1.4) 		184.1
(0.7) 		262.4
(3) 		201
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 24.3
(3)
A 		8.1
(-3)
A 		20.8
(1.7)
P 		18
(0.7)
A 		16
B 21.9
(-0.7)
P 		25.3
(3)
P 		24.2
(1.8)
P 		19.8
(-3)
P 		6
C 24.7
(3)
M 		21.6
(0.3)
P 		21.8
(0.5)
A 		17.8
(-3)
M 		7
avr 23.6
(3) 		18.3
(-3) 		22.3
(1.5) 		18.5
(-2.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 17.2
(-3)
P 		16.9
(-3)
P 		17.4
(-2.9)
P 		28.4
(-1.6)
P 		45.7
(0.4)
P 		67.8
(3)
P 		51
B 26
(-3)
P 		27
(-2.9)
P 		32.4
(-2.4)
P 		35.7
(-2.1)
P 		71.9
(1.3)
P 		90.1
(3)
P 		64
C 28.8
(-2)
A 		16.8
(-3)
A 		25.4
(-2.3)
P 		20.7
(-2.7)
P 		72.4
(1.6)
P 		89.4
(3)
P 		73
avr 24
(-2.6) 		20.2
(-3) 		25.1
(-2.5) 		28.3
(-2.2) 		63.3
(1.2) 		82.4
(3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192381_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2539
Sequence Type Exemplar sequence
Representative Public ID R06C7.9 NCBI
Target Description R06C7.9 /REP_DB=WormBase Gene ID /WP=CE06252 /TR=Q21777 /GB=CAA95846.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (5 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059651(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059651 NCBI Caenorhabditis elegans R06C7.9 (R06C7.9) mRNA, complete cds. 10/11 A 
SNAP00000036119 ENSEMBL cdna:SNAP chromosome:CEL140:I:7263658:7266752:1 10/11 None
GENEFINDER00000036128 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7263658:7266752:1 10/11 None
R06C7.9 ENSEMBL cdna:known chromosome:CEL140:I:7263658:7266785:1 gene:R06C7.9 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7263588-7266633(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (5 domains)
Ensembl R06C7.9
Entrez Gene 172470 Entrez gene
SwissProt Q21777 EMBL-EBI
WormBase CE32477 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA95846 Hypothetical protein R06C7.9 [Caenorhabditis elegans] ref|NP_492052.2| R06C7.9 [Caenorhabditis elegans] 0.0
blast CAE74228 Hypothetical protein CBG21912 [Caenorhabditis briggsae] 1.0E-101
blast CAE74228 Hypothetical protein CBG21912 [Caenorhabditis briggsae] 2.0E-36
blast XP_541362 PREDICTED: similar to Zinc finger protein 208 [Canis familiaris] 3.0E-19
Sequence
Target Sequence 
>C. ELEGANS:192381_AT
aactgtatcgatcgaaccactcttgaccgtcacgaatgcttcaagccatacaagatccga
gataagagacttttcaatattcaaaatatatcagttctcaagtgccctgactgcagagca
acttttgcaaatttgaatgttctgtctgaacatcgcaagacgtgtcaatacggcaacgta
tttgataatattcaacaaccgggaagttcttctttacgacaacatcacaggagcgataca
aatggagccgcgttgcagagaaaaatcacatcccgtgttcgtctagattcgaatactcca
gagaaatggacgtgccgagattgccacgcctcctttcataacctgcaagcgttgtgctca
catcgacacgaatctcacggaaaagaaatgtttcaatgcaacaactgttctgaaaccctt
ccaaactatcgtgctctccatgatcataatatgatggtaagtttatatgtaatgaattta
tatcacatatgctacaacatgaccagcattgcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGTATCGATCGAACCACTCTTG 476 143 1594 Antisense
ACCACTCTTGACCGTCACGAATGCT 138 85 1609 Antisense
GAATGCTTCAAGCCATACAAGATCC 329 331 1627 Antisense
TCAGTTCTCAAGTGCCCTGACTGCA 503 621 1684 Antisense
GTGCCCTGACTGCAGAGCAACTTTT 374 477 1695 Antisense
TCTGAACATCGCAAGACGTGTCAAT 147 609 1738 Antisense
GAAGTTCTTCTTTACGACAACATCA 367 337 1796 Antisense
GCGATACAAATGGAGCCGCGTTGCA 234 289 1826 Antisense
AAAAATCACATCCCGTGTTCGTCTA 585 129 1854 Antisense
GAAATGGACGTGCCGAGATTGCCAC 491 361 1896 Antisense
GCTACAACATGACCAGCATTGCAGG 702 301 2084 Antisense
Sequence Source Affymetrix Proprietary Database