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[192375_at] ATP-dependent AMP-binding protein

Description R07C3.4 /REP_DB=WormBase Gene ID /WP=CE12528 /TR=O16775 /GB=AAB66234.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ATP-dependent AMP-binding protein
Cluster 6grp_total > 44      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 78.6
(-3)
A 		123.2
(1.4)
A 		110.7
(0.2)
A 		139.7
(3)
A 		61
B 36.4
(-1.8)
A 		112.3
(3)
A 		77.4
(0.8)
A 		16.8
(-3)
A 		96
C 70.4
(-3)
A 		130.4
(1.6)
A 		96.3
(-1)
A 		148.5
(3)
A 		78
avr 61.8
(-3) 		122
(3) 		94.8
(0.3) 		101.7
(1) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 120.3
(3)
A 		66.4
(-1.8)
A 		98
(1)
A 		84.3
(-0.2)
A 		81.3
(-0.5)
A 		53.5
(-3)
A 		67
B 73.6
(0.5)
A 		90.2
(1.5)
A 		113.2
(3)
A 		18.3
(-3)
A 		79.1
(0.8)
A 		49.3
(-1)
A 		95
C 73.2
(0.6)
A 		93.4
(3)
A 		74.6
(0.7)
A 		43.6
(-3)
A 		69.4
(0.1)
A 		75.2
(0.8)
P 		50
avr 89
(2.2) 		83.3
(1.5) 		95.3
(3) 		48.7
(-3) 		76.6
(0.6) 		59.3
(-1.6) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 28.6
(2.8)
A 		26.7
(1.4)
A 		28.9
(3)
A 		20.4
(-3)
A 		9
B 11.6
(-1)
A 		27.7
(3)
A 		17.9
(0.6)
A 		3.6
(-3)
A 		24
C 23.3
(-3)
A 		37.5
(3)
A 		33.5
(1.3)
A 		25
(-2.3)
A 		14
avr 21.2
(-0.9) 		30.6
(3) 		26.8
(1.4) 		16.3
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 22.2
(1.8)
A 		23.6
(2.5)
A 		21.3
(1.3)
A 		21.4
(1.4)
A 		24.5
(3)
A 		13
(-3)
A 		12
B 25.6
(1.5)
A 		30
(2.5)
A 		27.5
(2)
A 		4.9
(-3)
A 		32.2
(3)
A 		18.4
(-0)
A 		27
C 27.1
(2.6)
A 		28.5
(3)
A 		19
(0.1)
A 		8.8
(-3)
A 		22.4
(1.1)
A 		25.2
(2)
P 		20
avr 25
(2.1) 		27.4
(3) 		22.6
(1.2) 		11.7
(-3) 		26.4
(2.6) 		18.9
(-0.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192375_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4613
Sequence Type Exemplar sequence
Representative Public ID R07C3.4 NCBI
Target Description R07C3.4 /REP_DB=WormBase Gene ID /WP=CE12528 /TR=O16775 /GB=AAB66234.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ATP-dependent AMP-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061455(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061455 NCBI Caenorhabditis elegans R07C3.4 (R07C3.4) mRNA, complete cds. 11/11 None
R07C3.4 ENSEMBL cdna:known chromosome:CEL140:II:933043:936932:1 gene:R07C3.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022243 7/11 Cross Hyb Matching Probes None
GENEFINDER00000022252 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:933041-936931(+) 96.04 100.0
Public Domain and Genome References
Gene Title ATP-dependent AMP-binding protein
Ensembl R07C3.4
Entrez Gene 187666 Entrez gene
SwissProt O16775 EMBL-EBI
WormBase CE12528 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66234 Hypothetical protein R07C3.4 [Caenorhabditis elegans] ref|NP_493856.1| R07C3.4 [Caenorhabditis elegans] 0.0
blast CAA94298 Hypothetical protein R09E10.3 [Caenorhabditis elegans] ref|NP_501893.1| R09E10.3 [Caenorhabditis elegans] 0.0
blast CAE60718 Hypothetical protein CBG04390 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 1.8E-30
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 1.5E-40
Sequence
Target Sequence 
>C. ELEGANS:192375_AT
ggatcccaaagcaactgcatcagcattcacagaagatggatttatgaagactggagatat
tggaaaattcactcctgaaggaactctccagcttatagatcgccgcgacaacgtactaaa
acttcctcaaggagagtttgtagctccggatctcacagagtctttgtacatttcatcaaa
atttgtacaacaaatttgtgtgcatgggaataaggaaaaaccatggctcgtagcagtcgt
cgttccagatccagagtacctggcttctcatgccaatctggagcacaatatcgagggaaa
gacctacgaggagttgtgcaaaattccggctctcgctgaagatgtgctccatgcccttat
aaaattttttatttgggtatttgccatacatctcactcccatcgccttctcaccgcaaaa
tggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCCCAAAGCAACTGCATCAGCA 144 513 1623 Antisense
GGAACTCTCCAGCTTATAGATCGCC 427 529 1702 Antisense
AGATCGCCGCGACAACGTACTAAAA 225 59 1719 Antisense
TGTAGCTCCGGATCTCACAGAGTCT 84 559 1761 Antisense
AAAACCATGGCTCGTAGCAGTCGTC 637 131 1839 Antisense
CGTCGTTCCAGATCCAGAGTACCTG 496 245 1860 Antisense
GGCTTCTCATGCCAATCTGGAGCAC 683 537 1884 Antisense
CTCTCGCTGAAGATGTGCTCCATGC 285 231 1952 Antisense
GTGCTCCATGCCCTTATAAAATTTT 632 477 1966 Antisense
TGGGTATTTGCCATACATCTCACTC 663 553 1996 Antisense
ATCGCCTTCTCACCGCAAAATGGCT 30 39 2023 Antisense
Sequence Source Affymetrix Proprietary Database