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[192369_s_at]

Description T07D4.4C /REP_DB=WormBase Gene ID /WP=CE18221 /TR=O62372 /GB=CAA90407.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ATP-dependent helicase (DEAD box)
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 82      6grp_total > 78      4grp_total > 62      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 328.5
(3)
P 		246.1
(-0.8)
P 		284
(0.9)
P 		198.8
(-3)
P 		130
B 257.6
(-0.8)
P 		228.5
(-2.3)
P 		328.9
(3)
P 		215.2
(-3)
P 		114
C 365.8
(3)
P 		253.5
(-1.2)
P 		330.6
(1.7)
P 		207.1
(-3)
P 		159
avr 317.3
(3) 		242.7
(-1.1) 		314.5
(2.8) 		207
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 355
1 2 3 4 5 6 range
A 299.1
(-3)
P 		338.9
(-2.2)
P 		318.7
(-2.6)
P 		388
(-1.3)
P 		387
(-1.3)
P 		615.3
(3)
P 		316
B 278.7
(-3)
P 		321.1
(-1.4)
P 		283.6
(-2.8)
P 		291.4
(-2.5)
P 		284
(-2.8)
P 		433.8
(3)
P 		155
C 340.8
(-0.7)
P 		302.2
(-1.8)
P 		330.8
(-1)
P 		260.5
(-3)
P 		403.1
(1.1)
P 		469.7
(3)
P 		209
avr 306.2
(-3) 		320.7
(-2.6) 		311
(-2.9) 		313.3
(-2.8) 		358
(-1.4) 		506.3
(3) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 119.6
(3)
P 		53.4
(-1.4)
P 		74.2
(-0)
P 		29.1
(-3)
P 		91
B 82.1
(3)
P 		56.4
(-1.3)
P 		76.2
(2)
P 		45.9
(-3)
P 		36
C 121.1
(3)
P 		72.9
(-0.4)
P 		115.2
(2.6)
P 		34.9
(-3)
P 		86
avr 107.6
(3) 		60.9
(-0.9) 		88.5
(1.4) 		36.6
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 55.1
(-3)
P 		120.5
(1.1)
P 		69.4
(-2.1)
P 		98.4
(-0.3)
P 		116.8
(0.9)
P 		149.8
(3)
P 		95
B 97
(-1.2)
P 		106.9
(-0.5)
P 		68.9
(-3)
P 		77.2
(-2.5)
P 		115.4
(0)
P 		161.7
(3)
P 		93
C 126.3
(1.2)
P 		92.2
(-0.7)
P 		84.2
(-1.2)
P 		52.4
(-3)
P 		130.5
(1.5)
P 		157.2
(3)
P 		105
avr 92.8
(-1.6) 		106.5
(-0.6) 		74.2
(-3) 		76
(-2.9) 		120.9
(0.4) 		156.2
(3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192369_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3235
Sequence Type Exemplar sequence
Representative Public ID T07D4.4C NCBI
Target Description T07D4.4C /REP_DB=WormBase Gene ID /WP=CE18221 /TR=O62372 /GB=CAA90407.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ATP-dependent helicase (DEAD box)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063491(11), NM_063490(11), NM_063492(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063491 NCBI Caenorhabditis elegans T07D4.4b (T07D4.4) mRNA, complete cds. 11/11 None
NM_063490 NCBI Caenorhabditis elegans T07D4.4a (T07D4.4) mRNA, complete cds. 11/11 None
NM_063492 NCBI Caenorhabditis elegans T07D4.4c (T07D4.4) mRNA, complete cds. 11/11 None
SNAP00000022750 ENSEMBL cdna:SNAP chromosome:CEL140:II:8885222:8889218:1 11/11 None
GENEFINDER00000022758 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8885222:8889218:1 11/11 None
T07D4.4b.2 ENSEMBL cdna:known chromosome:CEL140:II:8884811:8889569:1 gene:T07D4.4 11/11 None
T07D4.4b.1 ENSEMBL cdna:known chromosome:CEL140:II:8884813:8889570:1 gene:T07D4.4 11/11 None
T07D4.4c ENSEMBL cdna:known chromosome:CEL140:II:8884820:8889218:1 gene:T07D4.4 11/11 None
T07D4.4a ENSEMBL cdna:known chromosome:CEL140:II:8884820:8889218:1 gene:T07D4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8884816-8889215(+) 100.0 100.0
Public Domain and Genome References
Ensembl T07D4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90406 Hypothetical protein T07D4.4b [Caenorhabditis elegans] ref|NP_495892.1| T07D4.4b [Caenorhabditis elegans] 0.0
blast CAA90407 Hypothetical protein T07D4.4c [Caenorhabditis elegans] ref|NP_495893.1| T07D4.4c [Caenorhabditis elegans] 0.0
blast CAE59756 Hypothetical protein CBG03203 [Caenorhabditis briggsae] 0.0
blast CAA90408 Hypothetical protein T07D4.4a [Caenorhabditis elegans] ref|NP_495891.1| T07D4.4a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 4.0E-29
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 3.9E-57
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 4.0E-29
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 3.9E-57
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 4.0E-29
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 3.9E-57
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 4.0E-29
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 3.9E-57
Sequence
Target Sequence 
>C. ELEGANS:192369_S_AT
agcagttctacgttcaatgcgcctgtagagattcgaaatatgcggctatcgtcaaccttt
acagtggactcgctgtcgcctcatccgtcattttctgtcacacgaaggctagtgttatgt
ggttgtatgagaacatgagagcaagaggacatcaagttgatgttttacatggagatatga
ctgttgtcgagagagctgatacgatcatccatttcaagcgcggcgacttcaaagttctga
tcacgacgaacgtgtttgctcgtggaattgatgtagcgcaggtgtcggtggtgattaatt
acgatcttccgatcaagtacaccgatgaaggaactccgatggtggtggatggattcactc
aacctgattgtgaaacttacctccaccgtattggaagaactggaagatttggaaagactg
gtattgccattaatttgatcgattcagaagactcgatgaacatgattaatgtgctcgaaa
atcatttccagatgaagatcgctcgaatggatccatcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGTTCTACGTTCAATGCGCCTG 141 77 1301 Antisense
CGGCTATCGTCAACCTTTACAGTGG 198 243 1343 Antisense
ACCTTTACAGTGGACTCGCTGTCGC 387 87 1355 Antisense
TCATCCGTCATTTTCTGTCACACGA 118 623 1381 Antisense
TACGATCATCCATTTCAAGCGCGGC 238 649 1500 Antisense
GCGCGGCGACTTCAAAGTTCTGATC 320 287 1518 Antisense
GATCACGACGAACGTGTTTGCTCGT 456 421 1539 Antisense
TTGATGTAGCGCAGGTGTCGGTGGT 154 701 1568 Antisense
GATCTTCCGATCAAGTACACCGATG 58 421 1603 Antisense
ATTGTGAAACTTACCTCCACCGTAT 319 3 1667 Antisense
AGATCGCTCGAATGGATCCATCGAA 450 67 1796 Antisense
Sequence Source Affymetrix Proprietary Database