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[192367_at]

Description M02A10.3 /REP_DB=WormBase Gene ID /WP=CE25058 /CHR=X /FEA=Sanger Annotation /DEF=locus:sli-1 zinc-finger protein (ST.LOUIS) TR:Q21460 protein_id:AAC48059.1
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 27      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 50      6grp_total > 17      4grp_total > 23      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > Cu      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 681.5
(3)
P 		491.8
(-2.2)
P 		461
(-3)
P 		616
(1.2)
P 		221
B 649.3
(2.6)
P 		533.3
(0.2)
P 		379.7
(-3)
P 		670.7
(3)
P 		291
C 700.4
(3)
P 		448.3
(-3)
P 		493.5
(-1.9)
P 		655.3
(1.9)
P 		252
avr 677.1
(3) 		491.1
(-1.8) 		444.7
(-3) 		647.3
(2.2) 		232

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 731.2
(3)
P 		671.5
(1.9)
P 		397.8
(-3)
P 		400.9
(-2.9)
P 		491.9
(-1.3)
P 		529.3
(-0.6)
P 		333
B 749.9
(3)
P 		538.5
(-1)
P 		517.9
(-1.4)
P 		476.8
(-2.2)
P 		433.3
(-3)
P 		464.2
(-2.4)
P 		317
C 744.9
(3)
P 		537.8
(-1.3)
P 		492.7
(-2.3)
P 		458.7
(-3)
P 		477.4
(-2.6)
P 		504.1
(-2)
P 		286
avr 742
(3) 		582.6
(-0.2) 		469.5
(-2.5) 		445.5
(-3) 		467.5
(-2.6) 		499.2
(-1.9) 		297
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 248.1
(3)
P 		106.7
(-2.4)
P 		120.5
(-1.8)
P 		90.2
(-3)
P 		158
B 207.1
(3)
P 		131.7
(-0.8)
P 		88
(-3)
P 		142.9
(-0.2)
P 		119
C 231.8
(3)
P 		128.9
(-2.1)
P 		172
(0)
P 		110.5
(-3)
P 		121
avr 229
(3) 		122.4
(-2.6) 		126.8
(-2.4) 		114.5
(-3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 134.8
(-1.1)
P 		238.8
(3)
P 		86.6
(-3)
P 		101.7
(-2.4)
P 		148.4
(-0.6)
P 		128.9
(-1.3)
P 		152
B 260.9
(3)
P 		179.2
(-0.6)
P 		125.8
(-3)
P 		126.3
(-3)
P 		176
(-0.8)
P 		173.1
(-0.9)
P 		135
C 276.1
(3)
P 		164.1
(-0.7)
P 		125.4
(-1.9)
P 		92.3
(-3)
P 		154.5
(-1)
P 		168.8
(-0.5)
P 		184
avr 223.9
(3) 		194
(1.5) 		112.6
(-2.7) 		106.8
(-3) 		159.6
(-0.3) 		156.9
(-0.4) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192367_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18492
Sequence Type Exemplar sequence
Representative Public ID M02A10.3 NCBI
Target Description M02A10.3 /REP_DB=WormBase Gene ID /WP=CE25058 /CHR=X /FEA=Sanger Annotation /DEF=locus:sli-1 zinc-finger protein (ST.LOUIS) TR:Q21460 protein_id:AAC48059.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075744(11), NM_001029626(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075744 NCBI Caenorhabditis elegans Suppressor of LIneage defect family member (sli-1) (sli-1) mRNA, complete cds. 11/11 A 
NM_001029626 NCBI Caenorhabditis elegans Suppressor of LIneage defect family member (sli-1) (sli-1) mRNA, complete cds. 11/11 None
SNAP00000002290 ENSEMBL cdna:SNAP chromosome:CEL140:X:720728:724517:-1 11/11 None
GENEFINDER00000002296 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:720728:727739:-1 11/11 None
M02A10.3a ENSEMBL cdna:known chromosome:CEL140:X:720322:725956:-1 gene:M02A10.3 11/11 A 
M02A10.3b ENSEMBL cdna:known chromosome:CEL140:X:720728:725950:-1 gene:M02A10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029627 6/11 Cross Hyb Matching Probes None
M02A10.3c 6/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180419 3 2 NM_001029626 192367_at (11)
NM_001029627 175054_at (11)
NM_075744 175054_at (11), 192367_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:720727-725892(-) 100.0 100.0
Public Domain and Genome References
Ensembl M02A10.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84546 Suppressor of lineage defect protein 1, isoform a [Caenorhabditis elegans] emb|CAA61507.1| sli-1 [Caenorhabditis elegans] ref|NP_508145.2| Suppressor of LIneage defect family member (sli-1) [Caenorhabditis elegans] 0.0
blast AAK84547 Suppressor of lineage defect protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024797.1| Suppressor of LIneage defect family member (sli-1) [Caenorhabditis elegans] 0.0
blast AAT92069 Suppressor of lineage defect protein 1, isoform c [Caenorhabditis elegans] ref|NP_001024798.1| Suppressor of LIneage defect family member (sli-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 1.3E-97
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 1.6E-68
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.6E-15
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 4.4E-67
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 1.1E-94
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 1.6E-68
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.6E-15
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 4.4E-67
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 4.3E-36
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 1.6E-68
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.6E-15
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 4.4E-67
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 1.1E-94
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 1.6E-68
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.6E-15
Pfam IPR003153 EMBL-EBI Adaptor protein Cbl, N-terminal 4.4E-67
Sequence
Target Sequence 
>C. ELEGANS:192367_AT
tggtggcaacacatgtccattctgccgctacgaaatcaaaggaacaaatcgtgtgattat
tgacaggttcaagcccactccggtagaaattgaaaaagcgaaaaatgtagctgctgcgga
gaagaagctgatctcattagttcccgacgtgcctcccagaacgtatgtgtcccaatgttc
tcaaagtttgctgcatgacgcgtcaaactcaattccgtcggtcgacgagttgccgttggt
gccgccaccgttgccaccgaaagcattgggtaccctggacactttgaattcgtcacaaac
atcctcttcatacgtgaacatcaaagagctggaaaatgttgaaacaagcggagaagcatt
ggcacaagtggtaaaccggcaacgggcgccttcaatccaagctccaccactaccgccaag
gttatcagcgagcgagcaccaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTGGCAACACATGTCCATTCTGC 262 553 1278 Antisense
TCCATTCTGCCGCTACGAAATCAAA 288 591 1293 Antisense
TTCAAGCCCACTCCGGTAGAAATTG 247 683 1345 Antisense
AGAAGCTGATCTCATTAGTTCCCGA 418 73 1400 Antisense
ACGTATGTGTCCCAATGTTCTCAAA 51 95 1438 Antisense
GTCAAACTCAATTCCGTCGGTCGAC 124 463 1479 Antisense
CACCGTTGCCACCGAAAGCATTGGG 562 201 1523 Antisense
CATTGGGTACCCTGGACACTTTGAA 450 211 1541 Antisense
TGAATTCGTCACAAACATCCTCTTC 47 577 1562 Antisense
CACCACTACCGCCAAGGTTATCAGC 90 201 1682 Antisense
GGTTATCAGCGAGCGAGCACCAACC 2 507 1697 Antisense
Sequence Source Affymetrix Proprietary Database