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[192365_s_at] protein-tyrosine phosphatase like

Description C18E9.7 /REP_DB=WormBase Gene ID /WP=CE05299 /TR=Q18096 /GB=CAA93856.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase like
Cluster 6grp_total > 01      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 12.9
(-3)
A 		97
(3)
A 		36.3
(-1.3)
A 		13.7
(-2.9)
A 		84
B 4.7
(-3)
A 		59.6
(-0.8)
A 		157.4
(3)
A 		15.2
(-2.6)
A 		153
C 3.7
(-3)
A 		117.6
(2.6)
A 		126.8
(3)
A 		14.9
(-2.5)
A 		123
avr 7.1
(-3) 		91.4
(2.1) 		106.8
(3) 		14.6
(-2.5) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 50.4
(-1.5)
A 		154.2
(3)
A 		17.3
(-3)
A 		21.9
(-2.8)
A 		91.7
(0.3)
A 		69.7
(-0.7)
A 		137
B 23.5
(-2.7)
A 		142.6
(3)
A 		16.7
(-3)
A 		37.3
(-2)
A 		21.3
(-2.8)
A 		97.6
(0.9)
A 		126
C 44.6
(-1.4)
A 		127.3
(3)
A 		35.1
(-1.9)
A 		23
(-2.6)
A 		15.1
(-3)
A 		49.7
(-1.1)
A 		112
avr 39.5
(-2.2) 		141.4
(3) 		23
(-3) 		27.4
(-2.8) 		42.7
(-2) 		72.3
(-0.5) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 4.7
(-2.2)
A 		21.1
(3)
A 		9.5
(-0.6)
A 		2
(-3)
A 		19
B 1.5
(-3)
A 		14.7
(-0.7)
A 		36.5
(3)
A 		3.2
(-2.7)
A 		35
C 1.2
(-3)
A 		33.8
(1.5)
A 		44.2
(3)
A 		2.5
(-2.8)
A 		43
avr 2.5
(-3) 		23.2
(1.5) 		30.1
(3) 		2.6
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 9.3
(-2.4)
A 		54.8
(3)
A 		3.8
(-3)
A 		5.5
(-2.8)
A 		27.7
(-0.2)
A 		17
(-1.4)
A 		51
B 8.2
(-2.4)
A 		47.5
(3)
A 		4.1
(-3)
A 		9.9
(-2.2)
A 		8.7
(-2.4)
A 		36.4
(1.5)
A 		43
C 16.5
(-0.9)
A 		38.8
(3)
A 		8.9
(-2.2)
A 		4.6
(-3)
A 		4.9
(-2.9)
A 		16.6
(-0.9)
A 		34
avr 11.3
(-2.2) 		47
(3) 		5.6
(-3) 		6.7
(-2.8) 		13.8
(-1.8) 		23.3
(-0.4) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192365_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3530
Sequence Type Exemplar sequence
Representative Public ID C18E9.7 NCBI
Target Description C18E9.7 /REP_DB=WormBase Gene ID /WP=CE05299 /TR=Q18096 /GB=CAA93856.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063512(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063512 NCBI Caenorhabditis elegans C18E9.7 (C18E9.7) mRNA, complete cds. 11/11 None
SNAP00000035646 ENSEMBL cdna:SNAP chromosome:CEL140:II:8978826:8982666:-1 11/11 None
GENEFINDER00000035650 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8978826:8982587:-1 11/11 None
C18E9.7 ENSEMBL cdna:known chromosome:CEL140:II:8978489:8982587:-1 gene:C18E9.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8978822-8982584(-) 97.35 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase like
Ensembl C18E9.7
Entrez Gene 174432 Entrez gene
SwissProt Q18096 EMBL-EBI
WormBase CE05299 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93856 Hypothetical protein C18E9.7 [Caenorhabditis elegans] ref|NP_495913.1| C18E9.7 [Caenorhabditis elegans] 0.0
blast CAE59774 Hypothetical protein CBG03226 [Caenorhabditis briggsae] 0.0
blast XP_394130 PREDICTED: similar to ENSANGP00000013354 [Apis mellifera] 1.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.3E-6
Pfam IPR003961 EMBL-EBI Fibronectin, type III 6.9E-6
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.3E-6
Pfam IPR003961 EMBL-EBI Fibronectin, type III 6.9E-6
Pfam IPR003961 EMBL-EBI Fibronectin, type III 6.9E-6
Sequence
Target Sequence 
>C. ELEGANS:192365_S_AT
tgatctatcagttttctcgttgctcaatggatctcctgataattttgctgtaattgtatc
agacgatactgatctgaatgatgacaattatgaattgaagtcgtggtttgaagtgaagga
tgaagaagtttggggatcgtaccgcgcatctccatccacgtggaatccgttcgactcgga
acgagtaagacgagcagcattcaccgtcggaactgatgattgtgtgaaaagaaatctgga
tgagccgtactgtaatggaatcctgcgagccggcacggactatcgagtaaaaattcgaat
gtatacggacacaaaagtggcaatggaaactgattggggaagaattgaaggagaaaaaga
ttcagaaggagacgatgacgaagaagaggaagaagatgatggtcgccgtttcccttgcca
catgtatttgaacggatgccgtcgaaaatctgctgatcgacagttcccaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCTATCAGTTTTCTCGTTGCTC 163 565 2064 Antisense
GGATCTCCTGATAATTTTGCTGTAA 176 513 2092 Antisense
CATCCACGTGGAATCCGTTCGACTC 131 211 2216 Antisense
GAGCAGCATTCACCGTCGGAACTGA 451 389 2255 Antisense
GAAATCTGGATGAGCCGTACTGTAA 181 363 2294 Antisense
TGTAATGGAATCCTGCGAGCCGGCA 247 559 2314 Antisense
CGAGCCGGCACGGACTATCGAGTAA 501 249 2329 Antisense
AAGAAGATGATGGTCGCCGTTTCCC 191 151 2453 Antisense
GTTTCCCTTGCCACATGTATTTGAA 147 451 2471 Antisense
GGATGCCGTCGAAAATCTGCTGATC 380 513 2497 Antisense
ATCTGCTGATCGACAGTTCCCAATG 24 35 2511 Antisense
Sequence Source Affymetrix Proprietary Database