[Home] | [Total List]

[192361_s_at] NADH pyrophosphatase

Description F13H10.2 /REP_DB=WormBase Gene ID /WP=CE27958 /TR=SW:Q19427 /GB=CAA92955.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Haemophilus YJAD like protein
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 74      6grp_total > 85      4grp_total > 60      6grp_highest_sub > In      6grp_cgc > 67      6grp_high1_sub > In      6grp_cgc_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 594
1 2 3 4 range
A 755.1
(-0.6)
P 		691.6
(-1.3)
P 		1054.4
(3)
P 		552.6
(-3)
P 		502
B 939.8
(3)
P 		780.7
(1)
P 		872.3
(2.2)
P 		460.5
(-3)
P 		479
C 690.6
(-0.5)
P 		806.7
(1.5)
P 		896.8
(3)
P 		540.9
(-3)
P 		356
avr 795.2
(0.9) 		759.7
(0.4) 		941.2
(3) 		518
(-3) 		423

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 512
1 2 3 4 5 6 range
A 693.9
(-0.9)
P 		554.4
(-3)
P 		659.4
(-1.4)
P 		944.4
(3)
P 		770.9
(0.3)
P 		884.4
(2.1)
P 		390
B 482.6
(-3)
P 		580
(-1.9)
P 		598.7
(-1.6)
P 		784.6
(0.5)
P 		834.5
(1.1)
P 		994.7
(3)
P 		512
C 490.8
(-3)
P 		628.9
(-0.8)
P 		833.6
(2.6)
P 		801.8
(2)
P 		660.6
(-0.2)
P 		860.7
(3)
P 		370
avr 555.8
(-3) 		587.8
(-2.5) 		697.2
(-0.6) 		843.6
(1.8) 		755.3
(0.3) 		913.3
(3) 		358
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 274.9
(3)
P 		150.1
(-0.9)
P 		275.6
(3)
P 		80.9
(-3)
P 		195
B 299.7
(3)
P 		192.8
(-0.2)
P 		202.1
(0.1)
P 		98.1
(-3)
P 		202
C 228.6
(0.7)
P 		231.9
(0.8)
P 		312.6
(3)
P 		91.2
(-3)
P 		221
avr 267.7
(3) 		191.6
(0.4) 		263.4
(2.9) 		90.1
(-3) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 127.9
(-3)
P 		197.2
(0.7)
P 		143.6
(-2.2)
P 		239.5
(3)
P 		232.6
(2.6)
P 		215.3
(1.7)
P 		112
B 167.9
(-2.4)
P 		193.1
(-1.7)
P 		145.4
(-3)
P 		207.8
(-1.3)
P 		339.1
(2.2)
P 		370.9
(3)
P 		226
C 181.9
(-2)
P 		191.9
(-1.5)
P 		212.2
(-0.6)
P 		161.2
(-3)
P 		213.7
(-0.5)
P 		288.1
(3)
P 		127
avr 159.2
(-3) 		194.1
(-1.4) 		167.1
(-2.6) 		202.8
(-1) 		261.8
(1.7) 		291.4
(3) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192361_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9642
Sequence Type Exemplar sequence
Representative Public ID F13H10.2 NCBI
Target Description F13H10.2 /REP_DB=WormBase Gene ID /WP=CE27958 /TR=SW:Q19427 /GB=CAA92955.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Haemophilus YJAD like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069650(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069650 NCBI Caenorhabditis elegans NuDiX family member (ndx-9) (ndx-9) mRNA, complete cds. 11/11 None
SNAP00000039793 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11010092:11011818:-1 11/11 None
GENEFINDER00000039799 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11010092:11015853:-1 11/11 None
F13H10.2 ENSEMBL cdna:known chromosome:CEL140:IV:11010046:11011990:-1 gene:F13H10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11010097-11011824(-) 100.0 100.0
Public Domain and Genome References
Gene Title NADH pyrophosphatase
Gene Symbol ndx-9
Ensembl F13H10.2
Entrez Gene 177996 Entrez gene
WormBase CE35474 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597551_AT similar to nudix-type motif 13 cfa
CANINE_2:CFA.14135.1.S1_S_AT similar to nudix-type motif 13 cfa
CANINE_2:CFA.14135.2.S1_AT similar to nudix-type motif 13 cfa
CHICKEN:GGAAFFX.2681.1.S1_AT similar to nudix (nucleoside diphosphate linked moiety X)-type motif 13 gga
HU35KSUBB:RC_W80642_AT nudix (nucleoside diphosphate linked moiety X)-type motif 13 hs
HU35KSUBB:RC_R91083_AT nudix (nucleoside diphosphate linked moiety X)-type motif 13 hs
U133_X3P:HS.16951.0.S1_3P_AT nudix (nucleoside diphosphate linked moiety X)-type motif 13 hs
HG-U133A_2:214136_AT nudix (nucleoside diphosphate linked moiety X)-type motif 13 hs
HG-U133_PLUS_2:214136_AT nudix (nucleoside diphosphate linked moiety X)-type motif 13 hs
HG-U133A:214136_AT nudix (nucleoside diphosphate linked moiety X)-type motif 13 hs
HG-U95AV2:38502_AT nudix (nucleoside diphosphate linked moiety X)-type motif 13 hs
MOUSE430_2:1422126_A_AT nudix (nucleoside diphosphate linked moiety X)-type motif 13 mm
MOUSE430A_2:1422126_A_AT nudix (nucleoside diphosphate linked moiety X)-type motif 13 mm
MOE430A:1422126_A_AT nudix (nucleoside diphosphate linked moiety X)-type motif 13 mm
MG-U74BV2:162984_AT nudix (nucleoside diphosphate linked moiety X)-type motif 13 mm
MOE430A:1428943_AT nudix (nucleoside diphosphate linked moiety X)-type motif 13 mm
MOUSE430A_2:1428943_AT nudix (nucleoside diphosphate linked moiety X)-type motif 13 mm
MOUSE430_2:1428943_AT nudix (nucleoside diphosphate linked moiety X)-type motif 13 mm
MOE430B:1454075_S_AT nudix (nucleoside diphosphate linked moiety X)-type motif 13 mm
MOUSE430_2:1454075_S_AT nudix (nucleoside diphosphate linked moiety X)-type motif 13 mm
MG-U74BV2:116517_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 13, mRNA (cDNA clone IMAGE:3965960) mm
MG-U74CV2:129885_AT Nudix (nucleoside diphosphate linked moiety X)-type motif 13, mRNA (cDNA clone IMAGE:3965960) mm
Protein Similarities
Method ID Description E-Value
blast CAA92955 Hypothetical protein F13H10.2 [Caenorhabditis elegans] ref|NP_502051.2| NuDiX family member (ndx-9) [Caenorhabditis elegans] 0.0
blast AAG37064 NADH pyrophosphatase [Caenorhabditis elegans] sp|Q19427|NPY1_CAEEL NADH pyrophosphatase 0.0
blast CAA92953 Hypothetical protein F13H10.3a [Caenorhabditis elegans] ref|NP_741486.1| F13H10.3a [Caenorhabditis elegans] sp|Q19425|YSPK_CAEEL Hypothetical protein F13H10.3 in chromosome IV 0.0
blast CAD27622 Hypothetical protein F13H10.3b [Caenorhabditis elegans] ref|NP_741487.1| F13H10.3b [Caenorhabditis elegans] 0.0
blast T20863 hypothetical protein F13H10.3 - Caenorhabditis elegans 0.0
blast CAA92955 Hypothetical protein F13H10.2 [Caenorhabditis elegans] ref|NP_502051.2| NuDiX family member (ndx-9) [Caenorhabditis elegans] 1.0E-178
blast AAG37064 NADH pyrophosphatase [Caenorhabditis elegans] sp|Q19427|NPY1_CAEEL NADH pyrophosphatase 1.0E-178
blast CAE61975 Hypothetical protein CBG05979 [Caenorhabditis briggsae] 1.0E-165
Protein Domains
Database ID Description E-Value
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 4.2E-21
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 4.2E-21
Pfam IPR002422 EMBL-EBI Amino acid/polyamine transporter II 8.9E-12
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 4.2E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000039799 12 166-188,193-215,247-269,342-360,372-389,415-437,450-472,496-518,531-553,558-575,596-615,638-660
Sequence
Target Sequence 
>C. ELEGANS:192361_S_AT
tgtcccaagtgtgcagctgctttgaaaatgagatcaagtaagagtggagcagaatgtgtg
acgtgccaaagagtttattacccaacgttctcaccagtctccatcacacttatcacggat
ccaacaaacgaacatgcacttcttgttcgccatcgtggatcagctgggggagtttttacg
gctgttgcaggtttcgctcatgtaagcgacttgaaagaatctggagaaagtatggcagaa
tgtgcacgtcgtgaaattgctgaagaagttggaattgaagttgattcaatacgatcactg
gatatgtcacagccatggccaatgcccgattcgtcgcttatgattgcacatgtggcagtt
gcaaaaattgatcagaagatttctgtgtgccctgatgagttagaaactgctcaatggttc
acacgtcatcaagtcaaagaagctcttacaacaacacttgctgacccgctcctgaaaaat
cttccacgaacattggacgatcgtcagacactccactacatccctccagctggagctatc
gcacatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCCCAAGTGTGCAGCTGCTTTGA 465 557 367 Antisense
TCTCCATCACACTTATCACGGATCC 224 611 464 Antisense
TTCTTGTTCGCCATCGTGGATCAGC 510 689 506 Antisense
TTACGGCTGTTGCAGGTTTCGCTCA 483 683 542 Antisense
TATGTCACAGCCATGGCCAATGCCC 211 655 669 Antisense
CAATGCCCGATTCGTCGCTTATGAT 147 183 686 Antisense
AGATTTCTGTGTGCCCTGATGAGTT 556 65 743 Antisense
GAAACTGCTCAATGGTTCACACGTC 598 357 769 Antisense
CTTACAACAACACTTGCTGACCCGC 443 221 811 Antisense
TTGGACGATCGTCAGACACTCCACT 162 693 859 Antisense
TCCAGCTGGAGCTATCGCACATCAA 402 589 891 Antisense
Sequence Source Affymetrix Proprietary Database