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[192355_s_at] phosphoserine aminotransferase

Description F26H9.5 /REP_DB=WormBase Gene ID /WP=CE09710 /TR=SW:P91856 /GB=CAB04204.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=phosphoserine aminotransferase
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 68      6grp_total > 85      4grp_total > 25      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3467
1 2 3 4 range
A 772.8
(-3)
P 		2273.6
(-0.3)
P 		1975.4
(-0.8)
P 		4084.6
(3)
P 		3312
B 764.3
(-3)
P 		2276.3
(-0.4)
P 		1951.1
(-0.9)
P 		4231
(3)
P 		3467
C 862.7
(-3)
P 		2374.5
(-0.2)
P 		2442.1
(-0.1)
P 		4077.8
(3)
P 		3215
avr 799.9
(-3) 		2308.1
(-0.3) 		2122.9
(-0.6) 		4131.1
(3) 		3331

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1739
1 2 3 4 5 6 range
A 1106.8
(-3)
P 		1633.3
(-1.2)
P 		1653.7
(-1.1)
P 		2835
(3)
P 		1960.7
(-0)
P 		1917.2
(-0.2)
P 		1728
B 1147.7
(-3)
P 		1829.7
(0.7)
P 		1507.4
(-1.1)
P 		1996.5
(1.6)
P 		2264.5
(3)
P 		2222.3
(2.8)
P 		1117
C 1271.3
(-3)
P 		1776.2
(-1.1)
P 		1728.4
(-1.3)
P 		2845.7
(3)
P 		1929.9
(-0.5)
P 		2572.1
(2)
P 		1574
avr 1175.3
(-3) 		1746.4
(-0.5) 		1629.8
(-1) 		2559.1
(3) 		2051.7
(0.8) 		2237.2
(1.6) 		1384
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 658
1 2 3 4 range
A 281.4
(-3)
P 		493.5
(1)
P 		516.4
(1.5)
P 		597.9
(3)
P 		317
B 243.7
(-3)
P 		562.2
(-0.1)
P 		452.1
(-1.1)
P 		901.6
(3)
P 		658
C 285.6
(-3)
P 		682.7
(1.2)
P 		851.1
(3)
P 		687.6
(1.3)
P 		566
avr 270.2
(-3) 		579.5
(1) 		606.5
(1.4) 		729
(3) 		459

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 716
1 2 3 4 5 6 range
A 204
(-3)
P 		580.9
(1.4)
P 		360.1
(-1.2)
P 		719
(3)
P 		591.7
(1.5)
P 		466.8
(0.1)
P 		515
B 399.3
(-2.6)
P 		609
(-0.4)
P 		366
(-3)
P 		528.8
(-1.2)
P 		920
(3)
P 		828.7
(2)
P 		554
C 471.2
(-2.6)
P 		542
(-1.5)
P 		439.9
(-3)
P 		572.3
(-1.1)
P 		624.5
(-0.4)
P 		861
(3)
P 		421
avr 358.2
(-3) 		577.3
(0.6) 		388.7
(-2.5) 		606.7
(1.1) 		712.1
(2.9) 		718.8
(3) 		361
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 192355_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1161
Sequence Type Exemplar sequence
Representative Public ID F26H9.5 NCBI
Target Description F26H9.5 /REP_DB=WormBase Gene ID /WP=CE09710 /TR=SW:P91856 /GB=CAB04204.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=phosphoserine aminotransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060082(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060082 NCBI Caenorhabditis elegans F26H9.5 (F26H9.5) mRNA, complete cds. 11/11 None
SNAP00000021655 ENSEMBL cdna:SNAP chromosome:CEL140:I:9320892:9322575:-1 11/11 None
GENEFINDER00000021658 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9320892:9322575:-1 11/11 None
F26H9.5 ENSEMBL cdna:known chromosome:CEL140:I:9320767:9322611:-1 gene:F26H9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9320822-9322506(-) 100.0 100.0
Public Domain and Genome References
Gene Title phosphoserine aminotransferase
Ensembl F26H9.5
Entrez Gene 172756 Entrez gene
SwissProt P91856 EMBL-EBI
WormBase CE09710 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:253162_AT phosphoserine aminotransferase, chloroplast (PSAT) at
ATGENOME1:17104_S_AT phosphoserine aminotransferase, chloroplast (PSAT) at
CANINE:1590082_AT similar to phosphoserine aminotransferase isoform 1 cfa
CANINE_2:CFA.9362.1.S1_AT similar to phosphoserine aminotransferase isoform 1 cfa
CANINE_2:CFAAFFX.3267.1.S1_AT similar to phosphoserine aminotransferase isoform 1 cfa
CANINE_2:CFAAFFX.3267.1.S1_S_AT similar to phosphoserine aminotransferase isoform 1 cfa
DROSOPHILA_2:1625613_AT dm
DROSGENOME1:153150_AT dm
CHICKEN:GGA.1510.1.S1_S_AT phosphoserine aminotransferase 1 gga
HG-U133_PLUS_2:223062_S_AT phosphoserine aminotransferase 1 hs
HG-U133B:223062_S_AT phosphoserine aminotransferase 1 hs
HG-U133_PLUS_2:220892_S_AT phosphoserine aminotransferase 1 hs
HG-U133A:220892_S_AT phosphoserine aminotransferase 1 hs
HG-FOCUS:220892_S_AT phosphoserine aminotransferase 1 hs
HG-U133A_2:220892_S_AT phosphoserine aminotransferase 1 hs
HU35KSUBA:RC_AA460449_AT phosphoserine aminotransferase 1 hs
U133_X3P:G13436073_3P_A_AT phosphoserine aminotransferase 1 hs
U133_X3P:G10863954_3P_A_AT phosphoserine aminotransferase 1 hs
HG-U95C:51016_S_AT phosphoserine aminotransferase 1 hs
HG-U95E:78762_AT phosphoserine aminotransferase 1 hs
MOE430A:1451064_A_AT phosphoserine aminotransferase 1 mm
MOUSE430_2:1451064_A_AT phosphoserine aminotransferase 1 mm
MOUSE430A_2:1451064_A_AT phosphoserine aminotransferase 1 mm
MU11KSUBA:AA637306_S_AT phosphoserine aminotransferase 1 mm
MU11KSUBB:MSA.14444.0_S_AT phosphoserine aminotransferase 1 mm
MU11KSUBB:MSA.10044.0_F_AT phosphoserine aminotransferase 1 mm
MG-U74AV2:96295_AT phosphoserine aminotransferase 1 mm
MG-U74BV2:104813_AT phosphoserine aminotransferase 1 mm
MG-U74BV2:164805_AT phosphoserine aminotransferase 1 mm
MOE430A:1454607_S_AT phosphoserine aminotransferase 1 mm
MOUSE430A_2:1454607_S_AT phosphoserine aminotransferase 1 mm
MOUSE430_2:1454607_S_AT phosphoserine aminotransferase 1 mm
MU19KSUBC:TC39315_AT phosphoserine aminotransferase 1 mm
MG-U74BV2:108325_AT Phosphoserine aminotransferase 1, mRNA (cDNA clone IMAGE:3710326) mm
MU19KSUBC:TC34983_AT Phosphoserine aminotransferase 1, mRNA (cDNA clone IMAGE:3710326) mm
RT-U34:RC_AI102868_AT phosphoserine aminotransferase 1 rn
RG-U34A:RC_AI102868_AT phosphoserine aminotransferase 1 rn
RT-U34:RC_AI102868_G_AT phosphoserine aminotransferase 1 rn
RG-U34A:RC_AI102868_G_AT phosphoserine aminotransferase 1 rn
RT-U34:RC_AI230228_AT phosphoserine aminotransferase 1 rn
RG-U34A:RC_AI230228_AT phosphoserine aminotransferase 1 rn
RAE230A:1372665_AT phosphoserine aminotransferase 1 rn
RAT230_2:1372665_AT phosphoserine aminotransferase 1 rn
YEAST_2:1774801_AT 3-phosphoserine aminotransferase, catalyzes the formation of phosphoserine from 3-phosphohydroxypyruvate, required for serine and glycine biosynthesis; regulated by the general control of amino acid biosynthesis mediated by Gcn4p Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6564 L-serine biosynthesis inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8483 transaminase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04204 Hypothetical protein F26H9.5 [Caenorhabditis elegans] ref|NP_492483.1| F26H9.5 [Caenorhabditis elegans] sp|P91856|SERC_CAEEL Probable phosphoserine aminotransferase (PSAT) 0.0
blast CAE74312 Hypothetical protein CBG22021 [Caenorhabditis briggsae] 0.0
blast AAY56664 unknown [Drosophila simulans] gb|AAY56663.1| unknown [Drosophila melanogaster] gb|AAF56874.1| CG11899-PA [Drosophila melanogaster] gb|AAM50214.1| GM02605p [Drosophila melanogaster] ref|NP_652046.1| CG11899-PA [Drosophila melanogaster] sp|Q9VAN0|SERC_DROME Probable phosphoserine aminotransferase (PSAT) 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR000192 EMBL-EBI Aminotransferase, class V 4.4E-68
Sequence
Target Sequence 
>C. ELEGANS:192355_S_AT
tggtggctgatgtttcttcgaatttcatggctagaccatttgattttaaagatcacggag
tggttttcggtggagctcagaaaaaccttggcgccgctggtcttacaatcgttattgttc
ggaaagatcttatcggaaagcaacaagcaatcactccatctgtcttcagttataaagaaa
tgattgcaaataatagtttgtataatacaccaccaactggaggtatctacacaacaaatc
tcgttctcaaatggataaaatcaaaaggtggacttcaagcaatctatgagctaaaccttc
aaaaatctggaatgatttatgatataattgataattcaaatggtttttatcactgcgccg
ttgacaaacgctaccgtagtattatgaatgtttgcttccgaattggcggtccatctggaa
acgatgaacttgaggagaagttcttgaaaggatctattgaacgaaatatgattagtttaa
agggacatagatcagttggtggaatccgtgcatcgctctataatgccatctcagtcgagg
agacacaagtacttgccacgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTGGCTGATGTTTCTTCGAATTT 466 553 527 Antisense
GGAGTGGTTTTCGGTGGAGCTCAGA 100 517 583 Antisense
AGCTCAGAAAAACCTTGGCGCCGCT 670 79 600 Antisense
AAGCAACAAGCAATCACTCCATCTG 59 151 664 Antisense
ATCACTCCATCTGTCTTCAGTTATA 55 29 676 Antisense
ATCTACACAACAAATCTCGTTCTCA 76 33 751 Antisense
AAATGGTTTTTATCACTGCGCCGTT 291 121 864 Antisense
TCACTGCGCCGTTGACAAACGCTAC 147 627 876 Antisense
GTTTGCTTCCGAATTGGCGGTCCAT 650 451 916 Antisense
ATCGCTCTATAATGCCATCTCAGTC 514 37 1038 Antisense
GGAGACACAAGTACTTGCCACGTGG 450 519 1065 Antisense
Sequence Source Affymetrix Proprietary Database