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[192354_at] selenium-binding protein like

Description R11G10.2 /REP_DB=WormBase Gene ID /WP=CE12738 /TR=SW:Q21950 /GB=CAB01239.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=selenium-binding protein like
Cluster 6grp_total > 30      4grp_total > 44      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 9.7
(-2.7)
A 		93.1
(3)
A 		11.1
(-2.6)
A 		4.7
(-3)
A 		88
B 33.3
(2.4)
A 		36.5
(3)
A 		12.2
(-1.7)
A 		5.6
(-3)
A 		31
C 32.9
(3)
A 		13.9
(-3)
A 		13.8
(-3)
A 		30.1
(2.1)
A 		19
avr 25.3
(-0.8) 		47.8
(3) 		12.4
(-3) 		13.5
(-2.8) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 6.7
(-2.8)
A 		65.6
(3)
A 		6.1
(-2.9)
A 		10.6
(-2.4)
A 		14.2
(-2.1)
A 		4.9
(-3)
A 		61
B 36
(3)
A 		10.2
(-2.4)
A 		13.2
(-1.8)
A 		7.7
(-2.9)
A 		12.2
(-2)
A 		7.4
(-3)
A 		29
C 8.5
(-3)
A 		70.4
(-0.1)
A 		37.6
(-1.6)
A 		135.4
(3)
A 		8.3
(-3)
A 		8.5
(-3)
A 		127
avr 17.1
(-1.6) 		48.7
(2.7) 		19
(-1.4) 		51.2
(3) 		11.6
(-2.4) 		6.9
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 3.5
(-2.1)
A 		20.2
(3)
A 		2.9
(-2.3)
A 		0.7
(-3)
A 		20
B 10.6
(3)
A 		9
(2)
A 		2.8
(-2)
A 		1.2
(-3)
A 		9
C 10.9
(3)
A 		4
(-3)
A 		4.8
(-2.3)
A 		5.1
(-2)
A 		7
avr 8.3
(1.1) 		11.1
(3) 		3.5
(-2.2) 		2.3
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 1.2
(-3)
A 		23.3
(3)
A 		1.3
(-3)
A 		2.7
(-2.6)
A 		4.3
(-2.2)
A 		1.2
(-3)
A 		22
B 12.5
(3)
A 		3.4
(-2.2)
A 		3.2
(-2.3)
A 		2
(-3)
A 		5
(-1.3)
A 		2.8
(-2.5)
A 		11
C 3.2
(-2.9)
A 		21.5
(1.6)
A 		9.6
(-1.3)
A 		27.2
(3)
A 		2.7
(-3)
A 		2.8
(-3)
A 		25
avr 5.6
(-1.6) 		16.1
(3) 		4.7
(-2) 		10.6
(0.6) 		4
(-2.3) 		2.3
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192354_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13611
Sequence Type Exemplar sequence
Representative Public ID R11G10.2 NCBI
Target Description R11G10.2 /REP_DB=WormBase Gene ID /WP=CE12738 /TR=SW:Q21950 /GB=CAB01239.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=selenium-binding protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073950(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073950 NCBI Caenorhabditis elegans R11G10.2 (R11G10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000013708 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13514496:13517807:-1 9/11 None
R11G10.2 ENSEMBL cdna:known chromosome:CEL140:V:13514549:13517807:-1 gene:R11G10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013705 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13514548-13517807(-) 100.0 100.0
Public Domain and Genome References
Gene Title selenium-binding protein like
Ensembl R11G10.2
Entrez Gene 187819 Entrez gene
SwissProt Q21950 EMBL-EBI
WormBase CE12738 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8430 selenium binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01239 Hypothetical protein R11G10.2 [Caenorhabditis elegans] ref|NP_506351.1| R11G10.2 [Caenorhabditis elegans] sp|Q21950|SBP_CAEEL Putative selenium-binding protein 0.0
blast CAE62572 Hypothetical protein CBG06685 [Caenorhabditis briggsae] 0.0
blast CAE71767 Hypothetical protein CBG18761 [Caenorhabditis briggsae] 2.0E-77
blast CAA19490 Hypothetical protein Y37A1B.5 [Caenorhabditis elegans] ref|NP_502691.1| Y37A1B.5 [Caenorhabditis elegans] 2.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR008826 EMBL-EBI 56kDa selenium binding 5.6E-85
Sequence
Target Sequence 
>C. ELEGANS:192354_AT
gaaatgccggctctactaaccgatatgataatctcaatggatgatcgttggctgtatgtt
tgcggtttcttacatggagttttatggagatttgacatacaagatccgtttagagtttca
cttcatggaaagataaaccttggtggaattttcgacagttttccagaagttcgaataaaa
acctcaaatgcaatggaagaccgttggtggcttcctccggagactcgttctctgccacgt
ggcacaaaattccgtggaggtcccgcattgatgcaattatcgaaagacggatgccgtctt
tatgtttgcaattcgttttataaagcctgggacgcgcagttttatccggagcttatttct
gatggtggacaaatgatcagagtggatattgtggacgatgagatgcagttgaatgagaaa
tttctaattgatatgaaaaaaccctctttaattcaaaactacaggatttttaaaaaatca
gtttgcctcatgccaccaattcaaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATGCCGGCTCTACTAACCGATA 92 361 1126 Antisense
GATCGTTGGCTGTATGTTTGCGGTT 493 417 1168 Antisense
GTTTGCGGTTTCTTACATGGAGTTT 467 451 1183 Antisense
GATCCGTTTAGAGTTTCACTTCATG 334 417 1228 Antisense
TGGAAGACCGTTGGTGGCTTCCTCC 539 545 1319 Antisense
CAAAATTCCGTGGAGGTCCCGCATT 400 189 1370 Antisense
GACGGATGCCGTCTTTATGTTTGCA 379 377 1411 Antisense
AAAGCCTGGGACGCGCAGTTTTATC 252 125 1447 Antisense
GCAGTTTTATCCGGAGCTTATTTCT 155 311 1461 Antisense
AAAAATCAGTTTGCCTCATGCCACC 272 129 1598 Antisense
TGCCTCATGCCACCAATTCAAAAGT 31 587 1609 Antisense
Sequence Source Affymetrix Proprietary Database