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[192352_at] Zinc finger, C2H2 type (7 domains)

Description F35H8.3 /REP_DB=WormBase Gene ID /WP=CE00981 /TR=Q20082 /GB=CAA85325.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (7 domains)
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 55      4grp_high_8_8 > 11      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 21      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 250
1 2 3 4 range
A 296.1
(-3)
P 		358
(-0.8)
P 		314.3
(-2.3)
P 		463.5
(3)
P 		167
B 461
(3)
P 		251.2
(-2.1)
P 		213.2
(-3)
P 		427.3
(2.2)
P 		248
C 353
(2.9)
P 		264.5
(-1.1)
P 		220.5
(-3)
P 		356.2
(3)
P 		136
avr 370
(1.4) 		291.2
(-1.5) 		249.3
(-3) 		415.7
(3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 446
1 2 3 4 5 6 range
A 280.4
(-2.2)
P 		252.8
(-3)
P 		274.9
(-2.4)
P 		260.7
(-2.8)
P 		459.4
(3)
P 		387.8
(0.9)
P 		207
B 259.2
(-3)
P 		345.4
(-1.5)
P 		389
(-0.8)
P 		327.6
(-1.8)
P 		334.5
(-1.7)
P 		615.5
(3)
P 		356
C 229.6
(-3)
P 		263.9
(-2.5)
P 		229.2
(-3)
P 		372.1
(-1.1)
P 		387.8
(-0.9)
P 		675
(3)
P 		446
avr 256.4
(-3) 		287.4
(-2.4) 		297.7
(-2.2) 		320.1
(-1.7) 		393.9
(-0.3) 		559.4
(3) 		303
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 107.8
(3)
P 		77.7
(-1.5)
P 		82.2
(-0.8)
P 		67.8
(-3)
P 		40
B 147
(3)
P 		62
(-2.2)
P 		49.4
(-3)
P 		91.1
(-0.4)
P 		98
C 116.9
(3)
P 		76
(-1.3)
P 		76.8
(-1.2)
P 		60.1
(-3)
P 		57
avr 123.9
(3) 		71.9
(-2.7) 		69.5
(-3) 		73
(-2.6) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 51.7
(-3)
P 		89.9
(-0.4)
P 		59.9
(-2.4)
P 		66.1
(-2)
P 		138.6
(3)
P 		94.4
(-0.1)
P 		87
B 90.2
(-2.9)
P 		115
(-1.8)
P 		94.5
(-2.7)
P 		86.8
(-3)
P 		135.9
(-0.9)
P 		229.5
(3)
P 		143
C 85.1
(-2)
P 		80.5
(-2.2)
P 		58.3
(-3)
P 		74.8
(-2.4)
P 		125.5
(-0.6)
P 		226
(3)
P 		168
avr 75.7
(-2.7) 		95.1
(-1.7) 		70.9
(-3) 		75.9
(-2.7) 		133.3
(0.3) 		183.3
(3) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192352_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3804
Sequence Type Exemplar sequence
Representative Public ID F35H8.3 NCBI
Target Description F35H8.3 /REP_DB=WormBase Gene ID /WP=CE00981 /TR=Q20082 /GB=CAA85325.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (7 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063654(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063654 NCBI Caenorhabditis elegans F35H8.3 (F35H8.3) mRNA, complete cds. 11/11 None
SNAP00000035509 ENSEMBL cdna:SNAP chromosome:CEL140:II:9557655:9559258:1 11/11 None
F35H8.3 ENSEMBL cdna:known chromosome:CEL140:II:9557557:9559412:1 gene:F35H8.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000035516 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9557651-9559255(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (7 domains)
Ensembl F35H8.3
Entrez Gene 174505 Entrez gene
SwissProt Q20082 EMBL-EBI
WormBase CE00981 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85325 Hypothetical protein F35H8.3 [Caenorhabditis elegans] ref|NP_496055.1| F35H8.3 [Caenorhabditis elegans] 0.0
blast CAE57901 Hypothetical protein CBG00951 [Caenorhabditis briggsae] 1.0E-179
blast AAH91788 Zgc:112977 protein [Danio rerio] 4.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.2E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-4
Sequence
Target Sequence 
>C. ELEGANS:192352_AT
gattattgtcctcggatcttttcgaaattggaaagcaaaactcggcatcataaaatgcat
ttcacgcggagcacttgtcagacttgtatgcgatttttcactacagaagatgcgctgagg
catcatcagtccaccgctcatccagcaacattcgattctggcccaccacctgaagatctt
cttccaaatggaaaatcagctcgatatagttgcagttactgtaatcttcgatttcatttc
aaaaaagacatgcttgttcacgagcgaattcatactggagagaaaccatactcttgtggt
tactgtatgaaatcttttgcacaaagccaggcgttgacggctcatattagaactcacacg
aaagaattaccctatggatgtggaaaatgtgataaacggtttagagataattcctgcctc
cggaagcatgagcttgcagcgcacacagatgagccgatcgtccgtccaatatcggtcgcc
tacagtaatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTATTGTCCTCGGATCTTTTCGA 154 429 706 Antisense
TTCACGCGGAGCACTTGTCAGACTT 468 687 766 Antisense
ATGCGCTGAGGCATCATCAGTCCAC 706 41 815 Antisense
GACATGCTTGTTCACGAGCGAATTC 329 369 952 Antisense
GCACAAAGCCAGGCGTTGACGGCTC 514 317 1024 Antisense
GACGGCTCATATTAGAACTCACACG 597 375 1041 Antisense
GTTTAGAGATAATTCCTGCCTCCGG 679 449 1104 Antisense
GCCTCCGGAAGCATGAGCTTGCAGC 385 281 1121 Antisense
CTTGCAGCGCACACAGATGAGCCGA 14 219 1138 Antisense
CCGATCGTCCGTCCAATATCGGTCG 91 261 1159 Antisense
AATATCGGTCGCCTACAGTAATCAA 448 171 1173 Antisense
Sequence Source Affymetrix Proprietary Database