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[192349_at] Zinc finger, C2H2 type (2 domains)

Description F48F7.5 /REP_DB=WormBase Gene ID /WP=CE05892 /TR=Q20572 /GB=CAA93490.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (2 domains)
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 22      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 70      6grp_total > 22      4grp_total > 29      6grp_highest_sub > 01_02_03      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 249.1
(3)
P 		196.7
(0.9)
P 		102.7
(-3)
P 		171.2
(-0.2)
P 		146
B 224.7
(2.5)
P 		177.2
(0)
P 		118.7
(-3)
P 		234.5
(3)
P 		116
C 224.9
(2)
P 		178.6
(-0.8)
P 		141.8
(-3)
P 		241.7
(3)
P 		100
avr 232.9
(3) 		184.2
(0.4) 		121.1
(-3) 		215.8
(2.1) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 368
1 2 3 4 5 6 range
A 293.6
(1.4)
P 		301.9
(1.6)
P 		366.1
(3)
P 		222
(-0.2)
P 		175.3
(-1.3)
P 		96.8
(-3)
P 		269
B 335.6
(0.7)
P 		359.9
(1.2)
P 		464.9
(3)
P 		228.8
(-1.1)
P 		202.5
(-1.6)
P 		120.6
(-3)
P 		344
C 358.5
(3)
P 		336.6
(2.5)
P 		192.7
(-1)
P 		211.1
(-0.6)
P 		202.7
(-0.8)
P 		111.3
(-3)
P 		247
avr 329.2
(2.7) 		332.8
(2.8) 		341.2
(3) 		220.6
(-0.1) 		193.5
(-0.8) 		109.6
(-3) 		232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 90.7
(3)
P 		42.7
(-1.4)
P 		26.8
(-2.8)
P 		25.1
(-3)
P 		66
B 71.7
(3)
P 		43.8
(-0.8)
P 		27.5
(-3)
P 		50
(0.1)
P 		44
C 74.5
(3)
P 		51.3
(-1.1)
P 		49.4
(-1.5)
P 		40.8
(-3)
P 		34
avr 79
(3) 		45.9
(-1.5) 		34.6
(-3) 		38.6
(-2.5) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 54.1
(-0.8)
P 		107.4
(3)
P 		79.7
(1)
P 		56.3
(-0.7)
P 		52.9
(-0.9)
P 		23.6
(-3)
P 		84
B 116.8
(2.8)
P 		119.8
(3)
P 		112.9
(2.4)
P 		60.6
(-1.7)
P 		82.3
(-0)
P 		45
(-3)
P 		75
C 132.9
(3)
P 		102.7
(1.1)
P 		49
(-2.3)
P 		42.5
(-2.7)
P 		65.6
(-1.2)
P 		37.3
(-3)
P 		96
avr 101.3
(2.3) 		110
(3) 		80.5
(0.6) 		53.1
(-1.6) 		66.9
(-0.5) 		35.3
(-3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192349_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17336
Sequence Type Exemplar sequence
Representative Public ID F48F7.5 NCBI
Target Description F48F7.5 /REP_DB=WormBase Gene ID /WP=CE05892 /TR=Q20572 /GB=CAA93490.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Zinc finger, C2H2 type (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077925(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077925 NCBI Caenorhabditis elegans F48F7.5 (F48F7.5) mRNA, complete cds. 11/11 None
GENEFINDER00000000620 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13975580:13976840:1 11/11 None
SNAP00000000616 ENSEMBL cdna:SNAP chromosome:CEL140:X:13975723:13976840:1 11/11 None
F48F7.5 ENSEMBL cdna:known chromosome:CEL140:X:13975580:13976840:1 gene:F48F7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13975579-13976840(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (2 domains)
Ensembl F48F7.5
Entrez Gene 185990 Entrez gene
SwissProt Q20572 EMBL-EBI
WormBase CE05892 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93490 Hypothetical protein F48F7.5 [Caenorhabditis elegans] ref|NP_510326.1| F48F7.5 [Caenorhabditis elegans] 1.0E-146
blast CAA93490 Hypothetical protein F48F7.5 [Caenorhabditis elegans] ref|NP_510326.1| F48F7.5 [Caenorhabditis elegans] 1.0E-142
blast CAA93490 Hypothetical protein F48F7.5 [Caenorhabditis elegans] ref|NP_510326.1| F48F7.5 [Caenorhabditis elegans] 1.0E-125
blast CAE63058 Hypothetical protein CBG07335 [Caenorhabditis briggsae] 9.0E-46
blast CAA85499 Hypothetical protein ZK899.6 [Caenorhabditis elegans] ref|NP_509593.1| ZK899.6 [Caenorhabditis elegans] 1.0E-45
blast CAE63058 Hypothetical protein CBG07335 [Caenorhabditis briggsae] 5.0E-40
blast CAE63058 Hypothetical protein CBG07335 [Caenorhabditis briggsae] 1.0E-39
blast CAA85499 Hypothetical protein ZK899.6 [Caenorhabditis elegans] ref|NP_509593.1| ZK899.6 [Caenorhabditis elegans] 7.0E-39
Sequence
Target Sequence 
>C. ELEGANS:192349_AT
atgcacatgagaagatgccgtcggtttaattatcaattctctaaatttgcgaaccacacc
ggcgctcttttcaacaatttgatgcattcaaatgagcaacttggcactttattccaacaa
tatgttttggatgagcatatcataaaaatcaaaactggcagattgtcaaaaccagctaca
gaagaggtgccaaacatcgaatccgggaacgaagttcgtgaacttatcgatgacagtttt
aatcgatatctaagaaaacgagagcttgattcaactactgtcgatgttggttactctttg
ccaaacaaacggagaagggtcgaggaggaagatgaagatgaggaagcagacgatgataat
ggcgaatccactgatttggaaggttctgatgtggatgaaaaccgtgaagaaaaggaattg
atagacgaatccaatgattcagatgataccgaatttgaagaggaggacgaatatgaaacg
gattacgtagaagatgagccgacttttgatgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCACATGAGAAGATGCCGTCGGT 500 41 334 Antisense
ATGCCGTCGGTTTAATTATCAATTC 418 39 348 Antisense
TAAATTTGCGAACCACACCGGCGCT 508 639 375 Antisense
GAGCAACTTGGCACTTTATTCCAAC 594 389 427 Antisense
AAACCAGCTACAGAAGAGGTGCCAA 621 123 502 Antisense
GAGGTGCCAAACATCGAATCCGGGA 274 401 517 Antisense
AGTTCGTGAACTTATCGATGACAGT 451 63 546 Antisense
AGCTTGATTCAACTACTGTCGATGT 558 77 596 Antisense
CTGTCGATGTTGGTTACTCTTTGCC 407 239 611 Antisense
GATAATGGCGAATCCACTGATTTGG 389 423 688 Antisense
GAAGATGAGCCGACTTTTGATGAGG 104 339 823 Antisense
Sequence Source Affymetrix Proprietary Database