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[192344_at]

Description C28G1.3 /REP_DB=WormBase Gene ID /WP=CE04120 /TR=Q18286 /GB=AAA82350.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=GTP-binding protein and M protein
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 83      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 73      6grp_total > 84      4grp_total > 41      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 380
1 2 3 4 range
A 259.5
(-3)
P 		622.8
(3)
P 		497.6
(0.9)
P 		371
(-1.2)
P 		363
B 242.8
(-3)
P 		500.7
(3)
P 		381.6
(0.2)
P 		427
(1.3)
P 		258
C 274.8
(-3)
P 		507.7
(1.7)
P 		574.9
(3)
P 		397.3
(-0.6)
P 		300
avr 259
(-3) 		543.7
(3) 		484.7
(1.8) 		398.4
(-0.1) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 529
1 2 3 4 5 6 range
A 234.7
(-3)
P 		391.8
(-0.6)
P 		624.5
(3)
P 		577.1
(2.3)
P 		549.5
(1.8)
P 		447
(0.3)
P 		390
B 378.1
(-3)
P 		440.7
(-1.7)
P 		499.9
(-0.4)
P 		556.5
(0.8)
P 		661.9
(3)
P 		545
(0.5)
P 		284
C 275.7
(-3)
P 		434.3
(-1)
P 		424.4
(-1.2)
P 		763.6
(3)
P 		611.7
(1.1)
P 		567.5
(0.6)
P 		488
avr 296.2
(-3) 		422.3
(-0.7) 		516.3
(0.9) 		632.4
(3) 		607.7
(2.6) 		519.8
(1) 		336
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 94.5
(-0)
P 		135.2
(3)
P 		130.1
(2.6)
P 		54.3
(-3)
P 		81
B 77.4
(-3)
P 		123.7
(3)
P 		88.4
(-1.6)
P 		91
(-1.2)
P 		46
C 91
(-1.9)
P 		146
(0.6)
P 		200.4
(3)
P 		67
(-3)
P 		133
avr 87.6
(-1.5) 		135
(2.6) 		139.6
(3) 		70.8
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 43.3
(-3)
P 		139.3
(1.7)
P 		136
(1.5)
P 		146.4
(2)
P 		165.8
(3)
P 		108.8
(0.2)
P 		123
B 131.6
(-2.6)
P 		146.7
(-2)
P 		121.4
(-3)
P 		147.4
(-1.9)
P 		268.9
(3)
P 		203.2
(0.3)
P 		148
C 102.2
(-3)
P 		132.5
(-1.1)
P 		108
(-2.6)
P 		153.6
(0.2)
P 		197.9
(3)
P 		190
(2.5)
P 		96
avr 92.4
(-3) 		139.5
(-0.6) 		121.8
(-1.5) 		149.1
(-0.1) 		210.9
(3) 		167.3
(0.8) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192344_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16789
Sequence Type Exemplar sequence
Representative Public ID C28G1.3 NCBI
Target Description C28G1.3 /REP_DB=WormBase Gene ID /WP=CE04120 /TR=Q18286 /GB=AAA82350.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=GTP-binding protein and M protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077095
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000026792 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8826733:8828424:-1 11/11 None
SNAP00000026781 ENSEMBL cdna:SNAP chromosome:CEL140:X:8827188:8828424:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077094 2/11 Cross Hyb Matching Probes None
C28G1.5 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8826731-8835648(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T15689 hypothetical protein C28G1.3 - Caenorhabditis elegans 1.0E-141
blast T15689 hypothetical protein C28G1.3 - Caenorhabditis elegans 1.0E-129
blast AAM51522 Hypothetical protein C28G1.5 [Caenorhabditis elegans] ref|NP_509495.3| C28G1.5 [Caenorhabditis elegans] 3.0E-46
blast AAM51523 Hypothetical protein C28G1.6 [Caenorhabditis elegans] ref|NP_741866.1| C28G1.6 [Caenorhabditis elegans] 7.0E-44
blast AAM51523 Hypothetical protein C28G1.6 [Caenorhabditis elegans] ref|NP_741866.1| C28G1.6 [Caenorhabditis elegans] 2.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 1.5E-10
Sequence
Target Sequence 
>C. ELEGANS:192344_AT
gaaggacgttgtgacgagcggctgcaaatctcaatgtaaactaatgtgccgcacctgtga
agaattcggaaaccacaaggggcataccagaggcttgttgcaagaggaagcagctaaaat
gagaacggtcctgaacaattcagaaactaaacttgaaaacttctgtgactcaattcaatc
ttgcattgaacagtacaaaaatgctcaacgttcttttgaatctagtggagctacgtacaa
ggcaaaaattgaagaacacttcaagaaaattaaagaaatggtagcacagcgggagaagga
aactcttgtggaattgaaagatgcagcagattgctgccttgacgacaacaaaaagaaaat
ggaaattctatccgtaggacatcaacgtttcaaacaaaagctcactgatatgaaagaatt
tcacaatatcaaccaagccgggctgctcagcaaagaatctcaaatcatggaacttgtgga
aatggcaaaaattgcaacgcaatcaaatgttgttaacgcacctcaaccaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGACGTTGTGACGAGCGGCTGC 77 333 3399 Antisense
GACGAGCGGCTGCAAATCTCAATGT 576 379 3411 Antisense
TTCGGAAACCACAAGGGGCATACCA 457 643 3463 Antisense
GGGGCATACCAGAGGCTTGTTGCAA 62 499 3477 Antisense
AACTTCTGTGACTCAATTCAATCTT 366 139 3556 Antisense
TGCTCAACGTTCTTTTGAATCTAGT 150 581 3600 Antisense
CAGATTGCTGCCTTGACGACAACAA 553 205 3725 Antisense
CTATCCGTAGGACATCAACGTTTCA 38 219 3766 Antisense
ACAATATCAACCAAGCCGGGCTGCT 54 115 3821 Antisense
GGCTGCTCAGCAAAGAATCTCAAAT 145 541 3839 Antisense
TGTTGTTAACGCACCTCAACCAACC 557 559 3906 Antisense
Sequence Source Affymetrix Proprietary Database