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[192342_at] serine/threonine-protein kinase

Description F39F10.2 /REP_DB=WormBase Gene ID /WP=CE07204 /TR=Q20193 /GB=AAB00614.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine-protein kinase
Cluster 6grp_total > 05      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 6.9
(-3)
A 		6.4
(-3)
A 		6.7
(-3)
A 		134.3
(3)
A 		128
B 10.3
(-2.6)
A 		7.1
(-3)
A 		8.1
(-2.9)
A 		53.7
(3)
A 		47
C 8.2
(-2.9)
A 		11.1
(-2.7)
A 		7.4
(-3)
A 		72.7
(3)
A 		65
avr 8.5
(-2.9) 		8.2
(-2.9) 		7.4
(-3) 		86.9
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 20.8
(3)
A 		4.2
(-3)
A 		6.1
(-2.3)
A 		10.6
(-0.7)
A 		8.7
(-1.4)
A 		6.2
(-2.3)
A 		17
B 13.8
(-0.1)
A 		21.4
(3)
A 		13
(-0.4)
A 		7.1
(-2.8)
A 		6.7
(-3)
A 		7.4
(-2.7)
A 		15
C 13.2
(3)
A 		12.3
(2.3)
A 		5.5
(-2.9)
A 		5.4
(-3)
A 		10.1
(0.6)
A 		6.5
(-2.2)
A 		8
avr 15.9
(3) 		12.6
(0.8) 		8.2
(-2) 		7.7
(-2.3) 		8.5
(-1.8) 		6.7
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2.5
(-2.6)
A 		1.4
(-3)
A 		1.8
(-2.9)
A 		19.7
(3)
A 		18
B 3.3
(-2.1)
A 		1.8
(-3)
A 		1.9
(-2.9)
A 		11.4
(3)
A 		10
C 2.7
(-2.9)
A 		3.2
(-2.6)
A 		2.6
(-3)
A 		12.3
(3)
A 		10
avr 2.8
(-2.7) 		2.1
(-3) 		2.1
(-3) 		14.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 3.8
(3)
A 		1.5
(-2.5)
A 		1.3
(-3)
A 		2.7
(0.4)
A 		2.6
(0.1)
A 		1.5
(-2.5)
A 		3
B 4.8
(0.3)
A 		7.1
(3)
A 		3.2
(-1.5)
A 		1.9
(-3)
A 		2.7
(-2.1)
A 		2.8
(-2)
A 		5
C 4.9
(3)
A 		3.7
(1.1)
A 		1.4
(-2.5)
A 		1.1
(-3)
A 		3.3
(0.5)
A 		2.2
(-1.3)
A 		4
avr 4.5
(3) 		4.1
(2.1) 		2
(-2.8) 		1.9
(-3) 		2.9
(-0.7) 		2.2
(-2.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192342_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17591
Sequence Type Exemplar sequence
Representative Public ID F39F10.2 NCBI
Target Description F39F10.2 /REP_DB=WormBase Gene ID /WP=CE07204 /TR=Q20193 /GB=AAB00614.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=serine-threonine-protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078330(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078330 NCBI Caenorhabditis elegans F39F10.2 (F39F10.2) mRNA, complete cds. 11/11 None
SNAP00000020491 ENSEMBL cdna:SNAP chromosome:CEL140:X:16894797:16895829:1 11/11 None
GENEFINDER00000020498 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16894797:16895829:1 11/11 None
F39F10.2 ENSEMBL cdna:known chromosome:CEL140:X:16894797:16895829:1 gene:F39F10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16894796-16895829(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine-protein kinase
Ensembl F39F10.2
Entrez Gene 185497 Entrez gene
SwissProt Q20193 EMBL-EBI
WormBase CE07204 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00614 Hypothetical protein F39F10.2 [Caenorhabditis elegans] ref|NP_510731.1| F39F10.2 [Caenorhabditis elegans] 1.0E-153
blast AAA83281 Hypothetical protein F22F1.2 [Caenorhabditis elegans] ref|NP_509374.1| F22F1.2 [Caenorhabditis elegans] 3.0E-89
blast AAB00613 Hypothetical protein F39F10.3 [Caenorhabditis elegans] ref|NP_510730.1| F39F10.3 [Caenorhabditis elegans] 2.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 5.1E-15
Sequence
Target Sequence 
>C. ELEGANS:192342_AT
tgccatcgggattgttcacacggacatcaaggccgacaatctcatggtctcctacaagaa
cagggtccgcaaactggtgcttgtcgattacgggctctcctgctggttcaaggatcacaa
ccagaatcggactccaccagcaccgttcgacaacagatgcatgcatctgatccacacccc
cgccaaaaccgcaactggacatcctcacatggaggcggaagacttggtccaagttgccta
tctctcctgctctctgcaccaattcatgccatggaaagatgttgaggcgcccaagatgac
caagatgaagaagaaatttgctaagaatccaaagaagtaccttggcaatcatcaagatct
gaagccaatcatcaagatgttggtcaagcagaaacacggcgtcgagccagattacgaagg
aattttggatcttctccaagacatgttcggatcgttgggcggaggactcgcaagcggatc
gctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCATCGGGATTGTTCACACGGAC 436 585 387 Antisense
CGACAATCTCATGGTCTCCTACAAG 283 253 420 Antisense
GTCCGCAAACTGGTGCTTGTCGATT 164 477 451 Antisense
GCTCTCCTGCTGGTTCAAGGATCAC 509 299 480 Antisense
ATCACAACCAGAATCGGACTCCACC 631 27 500 Antisense
ACCAGCACCGTTCGACAACAGATGC 267 85 522 Antisense
GCAACTGGACATCCTCACATGGAGG 436 317 577 Antisense
CTCTCTGCACCAATTCATGCCATGG 487 231 636 Antisense
GATGTTGAGGCGCCCAAGATGACCA 310 409 664 Antisense
GACATGTTCGGATCGTTGGGCGGAG 645 369 826 Antisense
GAGGACTCGCAAGCGGATCGCTCAA 96 405 848 Antisense
Sequence Source Affymetrix Proprietary Database