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[192337_at]

Description C03D6.3 /REP_DB=WormBase Gene ID /WP=CE15578 /GEN=cel-1 /TR=SW:Q17607 /GB=CAA99765.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=mRNA capping enzyme
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_high_8_8 > 0      6grp_highest_nonorm > 90      6grp_total > 90      4grp_total > 07      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 154
(1.6)
P 		101.2
(-2.4)
P 		93.5
(-3)
A 		171.7
(3)
P 		78
B 197.8
(3)
P 		87.7
(-3)
M 		144.7
(0.1)
P 		144.3
(0.1)
P 		110
C 188.2
(3)
P 		97
(-3)
P 		168.2
(1.7)
P 		126.6
(-1.1)
P 		91
avr 180
(3) 		95.3
(-3) 		135.5
(-0.2) 		147.5
(0.7) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 124.8
(-3)
P 		197.8
(1.6)
P 		142.7
(-1.9)
P 		219.2
(3)
P 		129.3
(-2.7)
P 		207.1
(2.2)
P 		94
B 157.6
(0.1)
P 		161
(0.3)
P 		107.3
(-3)
P 		143.6
(-0.8)
P 		205.6
(3)
P 		170
(0.8)
P 		98
C 208.3
(2)
P 		206.5
(1.8)
P 		124.4
(-3)
P 		226
(3)
P 		168.8
(-0.4)
P 		150.7
(-1.4)
P 		102
avr 163.6
(0.3) 		188.4
(2.3) 		124.8
(-3) 		196.3
(3) 		167.9
(0.6) 		175.9
(1.3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 56.1
(3)
P 		22
(-3)
P 		24.4
(-2.6)
A 		25.1
(-2.5)
P 		34
B 63.1
(3)
P 		21.7
(-3)
M 		33.5
(-1.3)
P 		30.7
(-1.7)
P 		41
C 62.3
(3)
P 		27.9
(-2)
P 		58.6
(2.5)
P 		21.3
(-3)
P 		41
avr 60.5
(3) 		23.9
(-3) 		38.8
(-0.6) 		25.7
(-2.7) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 23
(-3)
P 		70.3
(3)
P 		31.1
(-2)
P 		55.6
(1.1)
P 		39
(-1)
P 		50.4
(0.5)
P 		47
B 54.8
(-0)
P 		53.6
(-0.1)
P 		26.1
(-3)
P 		38
(-1.8)
P 		83.5
(3)
P 		63.4
(0.9)
P 		57
C 77.2
(3)
P 		63
(1.1)
P 		31.7
(-3)
P 		45.5
(-1.2)
P 		54.6
(0)
P 		50.4
(-0.5)
P 		46
avr 51.7
(1.1) 		62.3
(3) 		29.6
(-3) 		46.4
(0.1) 		59
(2.4) 		54.7
(1.6) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 192337_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.969
Sequence Type Exemplar sequence
Representative Public ID C03D6.3 NCBI
Target Description C03D6.3 /REP_DB=WormBase Gene ID /WP=CE15578 /GEN=cel-1 /TR=SW:Q17607 /GB=CAA99765.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=mRNA capping enzyme
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025808(11), NM_001025809(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025808 NCBI Caenorhabditis elegans mRNA Capping Enzyme Like family member (cel-1) (cel-1) mRNA, complete cds. 11/11 None
NM_001025809 NCBI Caenorhabditis elegans mRNA Capping Enzyme Like family member (cel-1) (cel-1) mRNA, complete cds. 11/11 None
SNAP00000028821 ENSEMBL cdna:SNAP chromosome:CEL140:I:9673432:9675893:1 11/11 None
GENEFINDER00000028827 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9673432:9676557:1 11/11 None
C03D6.3a ENSEMBL cdna:known chromosome:CEL140:I:9673385:9676785:1 gene:C03D6.3 11/11 None
C03D6.3b ENSEMBL cdna:known chromosome:CEL140:I:9673468:9675893:1 gene:C03D6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9673362-9675824(+) 100.0 100.0
Public Domain and Genome References
Ensembl C03D6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99765 Hypothetical protein C03D6.3a [Caenorhabditis elegans] ref|NP_001020979.1| mRNA Capping Enzyme Like family member (cel-1) [Caenorhabditis elegans] sp|Q17607|MCE1_CAEEL mRNA capping enzyme [Includes: Polynucleotide 5'-triphosphatase (mRNA 5'-triphosphatase) (TPase); mRNA guanylyltransferase (GTP--RNA guanylyltransferase) (GTase)] 0.0
blast T18885 hypothetical protein C03D6.3 - Caenorhabditis elegans 0.0
blast CAH10769 Hypothetical protein C03D6.3b [Caenorhabditis elegans] ref|NP_001020980.1| mRNA Capping Enzyme Like family member (cel-1) [Caenorhabditis elegans] gb|AAB61344.1| mRNA capping enzyme [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001339 EMBL-EBI mRNA capping enzyme 1.0E-126
Pfam IPR001339 EMBL-EBI mRNA capping enzyme 8.4E-47
Pfam IPR001339 EMBL-EBI mRNA capping enzyme 1.0E-126
Pfam IPR001339 EMBL-EBI mRNA capping enzyme 8.4E-47
Sequence
Target Sequence 
>C. ELEGANS:192337_AT
actgctgcattcaaaactggacgcctgaagcacgagaaccagattatgtctgtcagaaga
aaagatttttatgatcttgaagcaactgctaaattatttggaccgaaatttgtgcagcat
gtcggacacgaaattgatggtctcattttccagccgaagaaaactaagtatgaaactgga
agatgtgataaagttctgaagtggaaaccaccatctcacaactctgttgattttctactg
aaagttgaaaagaaatgtaaagaaggaatgcttcccgaatggattggatatttatttgtc
cagaatctttccgatccatttggcacaatgaaagcaacggcaactctcaaaaagtatcat
aataaaattatcgaatgtacactgctggttgataatcaaggacggccaaaagagtggaaa
tttatgcgagaaagaacagataaatcgttgccgaatggattacgaactgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGCTGCATTCAAAACTGGACGCC 80 99 1243 Antisense
ACTGGACGCCTGAAGCACGAGAACC 130 97 1258 Antisense
TTTGGACCGAAATTTGTGCAGCATG 426 665 1339 Antisense
CCACCATCTCACAACTCTGTTGATT 63 275 1450 Antisense
ACAACTCTGTTGATTTTCTACTGAA 319 111 1460 Antisense
GGAATGCTTCCCGAATGGATTGGAT 212 533 1507 Antisense
ATTTGTCCAGAATCTTTCCGATCCA 648 17 1536 Antisense
ATCTTTCCGATCCATTTGGCACAAT 563 31 1547 Antisense
CAATGAAAGCAACGGCAACTCTCAA 385 181 1568 Antisense
GAATGTACACTGCTGGTTGATAATC 708 331 1615 Antisense
GTTGCCGAATGGATTACGAACTGCG 418 439 1689 Antisense
Sequence Source Affymetrix Proprietary Database